ecattominc(1) [debian man page]

ecattominc(1)															     ecattominc(1)

NAME

       ecattominc - convert an ecat format file (version 6.x or 7.x) to a minc format file

SYNOPSIS

       ecattominc [<options>] <infile> <outfile.mnc>

       ecattominc [-help]

DESCRIPTION

       ecattominc will convert an ecat data file (version 6.x or 7.x) to a minc file format Unless the -small_header option is specified, ecattom-
       inc will conserve the maximum informations from the ecat header and subheader fields which will be respectively stored as attributes of the
       ecat-main  and ecat-subhdr minc variables.  By default the whole 3D or 4D volume is converted, however, ecattominc allows for the selection
       of slice and frame ranges to be copied.	The voxel values of the generated minc file are decay corrected, unless the  nodecay_correct  flag
       is specified.  Finally, blood data file can be inserted within the minc file with the -bloodfile option.

OPTIONS

       Note that options can be specified in abbreviated form (as long as they are unique) and can be given anywhere on the command line.

General options
       -byte: Write out data as bytes (default).

       -short: Write out data as short integers.

       -clobber: Overwrite existing file.

       -noclobber: Don't overwrite existing file (default).

       -verbose: List files as they are converted (default)

       -quiet: Do not list files as they are converted.

Command specific options
       -decay_correct: Do decay correction on images (default).

       -nodecay_correct: Don't do decay correction.

       -slices:Range of slices to copy (counting from 0).
	       Default value: -2147483648 -2147483648

       -frames: Range of frames to copy (counting from 0).
	       Default value: -2147483648 -2147483648

       -frame: Single frame to copy (counting from 0).
	       Default value: -2147483648

       -small_header: Copy only basic header information.

       -all_header: Copy all header information (default).

       -bloodfile: Insert blood data from this file.

Generic options for all commands
       -help: Print summary of command-line options and abort

KNOWN BUGS

       No bug listed so far :=)

SEE ALSO

       minctoecat(1), rawtominc(1), minctoraw(1), dicomtominc(1)

AUTHOR

       Peter Neelin and Anthonin Reilhac (anthonin.reilhac@cermep.fr)

COPYRIGHTS

       Copyrights 2005 by Peter Neelin

																     ecattominc(1)

MINC_MODIFY_HEADER(1)						 MINC User's Guide					     MINC_MODIFY_HEADER(1)

NAME

       minc_modify_header - modify the attributes in the header of a minc file

SYNOPSIS

       minc_modify_header [<options>] <file>.mnc

DESCRIPTION

       Minc_modify_header allows the modification, insertion or deletion of attributes in a minc file. If possible, the file is modified in place,
       without copying the data. This will happen when inserting (modifying) an attribute that already exists and that	ends  up  being  the  same
       length  or shorter in the new file. If an attribute is deleted or lengthened, then a complete copy of the data is made, resulting in a com-
       pletely new file that replaces the original.

       If the file is compressed, then it is first decompressed into a file whose name is either the same as that of the original file up  to  the
       ".mnc"  extension  or  the same minus the compression extension (".bz", ".bz2", ".gz", ".Z", ".z" or ".zip").  The new file will not be re-
       compressed.

       Care is taken to completely overwrite any existing attribute when inserting a new attribute so that information is guaranteed to be removed
       from the file.

OPTIONS

       Note that options can be specified in abbreviated form (as long as they are unique) and can be given anywhere on the command line.

       -sinsert var:attr=value
	      Insert  a  string attribute into the header. If the attribute does not exist or the new string is longer than the existing one, then
	      all data in the file will be copied.

       -sappend var:attr=value
	      Similar to -sinsert, but appends the string to the attribute's value.  If the attribute already exists it must be of string type.

       -dinsert var:attr=value(,...)
	      Insert a double precision attribute into the header. If the attribute does not exist or the new attribute is longer than the  exist-
	      ing one, then all data in the file will be copied. A comma-separated array of values can be specified.

       -dappend var:attr=value(,...)
	      Similar  to  -dinsert, but appends the list of double precision values to the attribute's value.	If the attribute already exists it
	      must be of double precision type.

       -delete var:attr
	      Delete an attribute from the header. USE OF THIS OPTION WILL FORCE A COMPLETE COPY OF ALL DATA TO BE  MADE.  Use	-sinsert  with	an
	      empty string to delete information without copying data (the attribute will continue to exist).

       -help  Print summary of command-line options and exit.

       -version
	      Print the program's version number and exit.

EXAMPLES
:
       To replace the patient name with an identifier string:

	      minc_modify_header file.mnc -sinsert 'patient:full_name=C02-F0023'

       To delete the patient name completely (forcing a copy of all data):

	      minc_modify_header file.mnc -delete 'patient:full_name'

       To  hide the patient name without copying data, assuming that we know that the attribute exists (the attribute will remain in the file, but
       it will be empty):

	      minc_modify_header file.mnc -sinsert 'patient:full_name='

AUTHOR

       Peter Neelin

COPYRIGHTS

       Copyright (C) 1995 by Peter Neelin

							   $Date: 2004-05-25 21:33:11 $ 				     MINC_MODIFY_HEADER(1)