DCM2NII(1) User Commands DCM2NII(1)NAME
dcm2nii - convert DICOM or PAR/REC image into the NIfTI format
SYNOPSIS
dcm2nii <options> <sourcenames>
OPTIONS -a Anonymize [remove identifying information]: Y,N = Y
-b load settings from specified inifile, e.g. '-b /etc/mricron.ini'
-c Collapse input folders: Y,N = N
-d Date in filename [filename.dcm -> 20061230122032.nii]: Y,N = Y
-e events (series/acq) in filename [filename.dcm -> s002a003.nii]: Y,N = Y
-f Source filename [e.g. filename.par -> filename.nii]: Y,N = Y
-g gzip output, filename.nii.gz [ignored if '-n n']: Y,N = Y
-i ID in filename [filename.dcm -> johndoe.nii]: Y,N = Y
-n output .nii file [if no, create .hdr/.img pair]: Y,N = Y
-o Output Directory, e.g. '/tmp' (if unspecified, source directory is used)
-p Protocol in filename [filename.dcm -> TFE_T1.nii]: Y,N = Y
-r Reorient image to nearest orthogonal: Y,N
-s SPM2/Analyze not SPM5/NIfTI [ignored if '-n y']: Y,N = N
-v Convert every image in the directory: Y,N = Y
-x Reorient and crop 3D NIfTI images: Y,N = N
You can also set defaults by editing /home/michael/.dcm2nii/dcm2nii.ini
EXAMPLES
dcm2nii -a y /home/joe/Documents/dcm/IM_0116
AUTHOR
dcm2nii was written by Chris Rorden.
This manual page was written by Michael Hanke <michael.hanke@gmail.com>, for the Debian project (but may be used by others).
SEE ALSO mricron(1)
MRIcron Homepage: http://www.cabiatl.com/mricro/mricron/
Michael Hanke April 2010 DCM2NII(1)
Check Out this Related Man Page
NIFTI(1)NIFTI(1)NAME
nifti - IO libraries and tools for the NIFTI-1 data format
DESCRIPTION
The NIfTI-1 data format is a binary file format for storing medical image data, e.g. magnetic resonance image (MRI) and functional MRI
(fMRI) brain images.
The NIfTI format is an extension of the widely used ANALYZE 7.5 format. The goals of this modified data format are (1) to add information
to the header that will be useful for functional neuroimaging data analysis and display. These additions include:
- More basic data types.
- Two affine transformations to specify voxel coordinates.
- "Intent" codes and parameters to describe the meaning of the data.
- Affine scaling of the stored data values to their "true" values.
- Optional storage of the header and image data in one file (.nii).
And (2) To maintain compatibility with non-NIFTI-aware ANALYZE 7.5 compatible software (i.e., such a program should be able to do something
useful with a NIFTI-1 dataset -- at least, with one stored in a traditional .img/.hdr file pair).
The NIfTI library package consists of two libraries:
znzlib -- low level library for handling read/write of compressed files.
niftilib -- core i/o routines for reading and writing nifti-1 format files. Primarily routines to read/write and manipulate the header
field information, including orientation matrices. Volume-wise, timecourse-wise, access to image data.
SEE ALSO nifti_tool(1), nifti1_test(1), nifti_stats(1).
Homepage: http://niftilib.sourceforge.net
AUTHOR
The NIfTI libraries were written by the NIfTI Data Format Working Group (DFWG, http://nifti.nimh.nih.gov/ ).
This manual page was written by Michael Hanke <michael.hanke@gmail.com>, for the Debian project (but may be used by others).
Michael Hanke August 2006 NIFTI(1)
Hi All...
The code i have written is
if(filename)
remove_files (filename);
and my remove function is
=========================================
void remove_files(char *rf)
{
if (remove(rf)==0)
printf("(%d) Deleting %s\n",getpid(), rf); // JC 10/24/2003
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Hi,
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0003.dcm
............
..........
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IM-0001-0002.dcm
IM-0001-0003.dcm
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IM-0001-0005.dcm
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