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cmtk-xform2itk(1) [debian man page]

xform2itk(1)					       The Computational Morphometry Toolkit					      xform2itk(1)

NAME

       xform2itk - Convert affine transformations to ITK format.

SYNOPSIS

       xform2itk InputPath OutputPath

DESCRIPTION

       This  tool  converts  coordinate  transformations from CMTK format to ITK format and, in the process, also correct for differences in image
       coordinate conventions

OPTIONS

   Global Toolkit Options (these are shared by all CMTK tools)
       --help
	    Write list of basic command line options to standard output.

       --help-all
	    Write complete list of basic and advanced command line options to standard output.

       --wiki
	    Write list of command line options to standard output in MediaWiki markup.

       --man
	    Write man page source in 'nroff' markup to standard output.

       --version
	    Write toolkit version to standard output.

       --echo
	    Write the current command line to standard output.

       --verbose-level <integer>
	    Set verbosity level.

       --verbose, -v
	    Increment verbosity level by 1 (deprecated; supported for backward compatibility).

       --threads <integer>
	    Set maximum number of parallel threads (for POSIX threads and OpenMP).

   Input parameters
       --fixed-space <string>
	    Change fixed image coordinate space (e.g., 'RAS', 'LPS', ...). This defaults to ITK standard space.  [Default: LPS ]

       --moving-space <string>
	    Change moving image coordinate space (e.g., 'RAS', 'LPS', ...). This defaults to ITK standard space.  [Default: LPS ]

       --invert-input
	    Invert input transformation before conversion

   Output parameters
       --fixed-image <string>
	    Override transformation's fixed/reference image (if any) with this one.  [Default: NONE]

       --moving-image <string>
	    Override transformation's moving/floating image (if any) with this one.  [Default: NONE]

AUTHORS

       Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis, Calvin R. Maurer, and Daniel B. Russakoff

LICENSE

       http://www.fsf.org/licensing/licenses/gpl.html

BUGS

       Report bugs at http://nitrc.org/projects/cmtk/

ACKNOWLEDGMENTS

       From April 2009 through September 2011, CMTK Development and Maintenance was supported by the National Institute of Biomedical Imaging  and
       Bioengineering under Grant No.R01 EB008381 (PI: Torsten Rohlfing).

CMTK 2.2.2							    Jul 20 2012 						      xform2itk(1)

Check Out this Related Man Page

reorient(1)					       The Computational Morphometry Toolkit					       reorient(1)

NAME

       reorient - Reorientation

SYNOPSIS

       reorient [options] new-orientation infile outfile

DESCRIPTION

       Convert between image orientations, i.e., physically re-order pixel array and adapt stored anatomical orientation information

OPTIONS

   Global Toolkit Options (these are shared by all CMTK tools)
       --help
	    Write list of basic command line options to standard output.

       --help-all
	    Write complete list of basic and advanced command line options to standard output.

       --wiki
	    Write list of command line options to standard output in MediaWiki markup.

       --man
	    Write man page source in 'nroff' markup to standard output.

       --version
	    Write toolkit version to standard output.

       --echo
	    Write the current command line to standard output.

       --verbose-level <integer>
	    Set verbosity level.

       --verbose, -v
	    Increment verbosity level by 1 (deprecated; supported for backward compatibility).

       --threads <integer>
	    Set maximum number of parallel threads (for POSIX threads and OpenMP).

   Main Options
       --input-orientation <string>, -i <string>
	    Override input orientation. This is a three-letter code, e.g., 'RAS', 'LPI', etc.  [Default: NONE]

       --output-orientation <string>, -o <string>
	    Override output orientation. Default is 'RAS', or the closest match supported by the output image file format [Default: NONE]

       --output-space <string>
	    Override  output  coordinate space (e.g., 'RAS', 'LAS', 'LPS'). This does not affect the array order. Default is to write image in the
	    input image space.	[Default: NONE]

AUTHORS

       Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis, Calvin R. Maurer, and Daniel B. Russakoff

LICENSE

       http://www.fsf.org/licensing/licenses/gpl.html

BUGS

       Report bugs at http://nitrc.org/projects/cmtk/

ACKNOWLEDGMENTS

       From April 2009 through September 2011, CMTK Development and Maintenance was supported by the National Institute of Biomedical Imaging  and
       Bioengineering under Grant No.R01 EB008381 (PI: Torsten Rohlfing).

CMTK 2.2.2							    Jul 20 2012 						       reorient(1)
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