PFM(1) General Commands Manual PFM(1)NAME
pfm - Graphical PostgreSQL client using Tcl/Tk
SYNOPSIS
pfm
DESCRIPTION
This manual page documents briefly the pfm command.
pfm (Postgres Forms) is a graphical PostgreSQL client.
It allows the creation of forms to access data within a database.
Related queries can be explored by the use of links between forms.
OPTIONS
None
SEE ALSO postgres(1), psql(1).
The program documentation can be found at /usr/share/doc/pfm/help.html.
AUTHOR
pfm was written by Willem Herremans <w.herremans@scarlet.be>.
Homepage: http://pgfoundry.org/projects/pfm/
This manual page was written by Mark Hindley <mark@hindley.org.uk>, for the Debian project (but may be used by others).
Aug 8, 2007 PFM(1)
Check Out this Related Man Page
TFBS::Matrix(3pm) User Contributed Perl Documentation TFBS::Matrix(3pm)NAME
TFBS::Matrix - base class for matrix patterns, containing methods common to all
DESCRIPTION
TFBS::Matrix is a base class consisting of universal constructor called by its subclasses (TFBS::Matrix::*), and matrix manipulation
methods that are independent of the matrix type. It is not meant to be instantiated itself.
FEEDBACK
Please send bug reports and other comments to the author.
AUTHOR - Boris Lenhard
Boris Lenhard <Boris.Lenhard@cgb.ki.se> Modified by Eivind Valen eivind.valen@gmail.com
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are preceded with an underscore.
matrix
Title : matrix
Usage : my $matrix = $pwm->matrix();
$pwm->matrix( [ [12, 3, 0, 0, 4, 0],
[ 0, 0, 0,11, 7, 0],
[ 0, 9,12, 0, 0, 0],
[ 0, 0, 0, 1, 1,12]
]);
Function: get/set for the matrix data
Returns : a reference to 2D array of integers(PFM) or floats (ICM, PWM)
Args : none for get;
a four line string, reference to 2D array, or a 2D piddle for set
pdl_matrix
Title : pdl_matrix
Usage : my $pdl = $pwm->pdl_matrix();
Function: access the PDL matrix used to store the actual
matrix data directly
Returns : a PDL object, aka a piddle
Args : none
revcom
Title : revcom
Usage : my $revcom_pfm = $pfm->revcom();
Function: create a matrix pattern object which is reverse complement
of the current one
Returns : a TFBS::Matrix::* object of the same type as the one
the method acted upon
Args : none
rawprint
Title : rawprint
Usage : my $rawstring = $pfm->rawprint);
Function: convert matrix data to a simple tab-separated format
Returns : a four-line string of tab-separated integers or floats
Args : none
prettyprint
Title : prettyprint
Usage : my $prettystring = $pfm->prettyprint();
Function: convert matrix data to a human-readable string format
Returns : a four-line string with nucleotides and aligned numbers
Args : none
length
Title : length
Usage : my $pattern_length = $pfm->length;
Function: gets the pattern length in nucleotides
(i.e. number of columns in the matrix)
Returns : an integer
Args : none
randomize_columns
Title : randomize_columns
Usage : $pfm->randomize_columns();
Function: Randomizes the columns of a matrix
Returns : Nothing
Args : none
perl v5.14.2 2008-01-24 TFBS::Matrix(3pm)
I have two files. File1 is shown below.
>153L:B|PDBID|CHAIN|SEQUENCE
RTDCYGNVNRIDTTGASCKTAKPEGLSYCGVSASKKIAERDLQAMDRYKTIIKKVGEKLCVEPAVIAGIISRESHAGKVL
KNGWGDRGNGFGLMQVDKRSHKPQGTWNGEVHITQGTTILINFIKTIQKKFPSWTKDQQLKGGISAYNAGAGNVRSYARM
DIGTTHDDYANDVVARAQYYKQHGY
>16VP:A|PDBID|CHAIN|SEQUENCE... (7 Replies)
Hi All,
Iam unable to print the below block and getting the error.Can anyone please help me in this.
Input Data
eaits001z$ echo "-------LINENO_JOBID_VAL--------${LINENO_JOBID_VAL}---"
-------LINENO_JOBID_VAL--------58167|253473 58169|253473 58171|253473 58179|253473 58180|253473 58181|257311... (9 Replies)
Has anyone ever encountered this? It's one of those it was working Monday but not today issues.
We have an account pcadmin in the group utl, its supposed to read the files in utl. No issues on Monday, but today pcadmin can't read anything owned by utl. Below you can see it still has the group... (8 Replies)
Hi,
I am a junior dba and started carrier very new. I have a batch file to create some script of db creation. I want that batch file to convert in .sh file so that I can directly run that in the AIX box to generate those files.
Please help me with the code for AIX. Batch file is here:
... (2 Replies)
I am wondering if someone can help a brother out. I am trying to create a DB using a GUI and when I am about to finish, it gets stuck. I hit finish but nothing happens. Any help from the community will be highly appreciated.
... (0 Replies)
I'm trying to exlude a list of values with perl to process while reading in a file. Is there a way to use the next if with a list?
Example:
@array = qw(val1 val2 val3 val6);
while (<>) {
next if $_ =~ @array; # values I don't want to process here
print; # process the rest here
}... (8 Replies)
I'm trying to change date format using this script from day/month/year to month/day/year
#!/bin/bash
while read line; do
echo "$line"
date=$(echo "$line" | cut -d/ -f1 )
month=$(echo "$line" | cut -d/ -f2 )
echo $month"/"$date"/2017"
done < ~/Downloads/Dates.csv
But I get output as... (5 Replies)
To bakunin and corona688:
My result when text in file is
ms_ww_546
ms_rrL_99999
ms_nnn_67_756675
is
https://www.unix.com/C:\Users\Fejoz\Desktop\ttt.jpg
I hope you can see the picture. There is like a "whitespace character" after 2 of the 3 created directories.
---------- Post... (0 Replies)
Hi Gurus,
I have below requirement and have no idea how to achieve this.
the input file like below. there are multiple sections in file, each section has multiple lines. I need to find certain lines (value1, value2, value3 are key words for line searching) and generate another file. in some... (9 Replies)