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nifti_stats(1) [debian man page]

NIFTI_STATS(1)							   User Commands						    NIFTI_STATS(1)

NAME

       nifti_stats - compute NIfTI statistical functions

SYNOPSIS

       nifti_stats [-q|-d|-1|-z] value CODE [p1 p2 p3]

DESCRIPTION

       nifti_stats  supports several distributions (normal, uniform, logistic, chi, etc.) and calculates density or cummulative distribution func-
       tion (and many more). Values are printed to stdout and can be piped to other tools.

       value can be a single number or in the form bot:top:step.
	      default ==> output p = Prob(statistic < val).

       -q     ==> output is 1-p.

       -d     ==> output is density.

       -1     ==> output is x such that Prob(statistic < x) = val.

       -z     ==> output is z such that Normal cdf(z) = p(val).

       -h     ==> output is z such that 1/2-Normal cdf(z) = p(val).

       Allowable CODEs:

       CORREL, TTEST, FTEST, ZSCORE, CHISQ, BETA, BINOM, GAMMA, POISSON, NORMAL, FTEST_NONC, CHISQ_NONC, LOGISTIC, LAPLACE,  UNIFORM,  TTEST_NONC,
       WEIBULL, CHI, INVGAUSS, EXTVAL, PVAL, LOGPVAL and LOG10PVAL

	      Following CODE are distributional parameters, as needed.

       Results are written to stdout, 1 number per output line.

EXAMPLE

       Piping output into AFNI program 1dplot:

	      nifti_stats -d 0:4:.001 INVGAUSS 1 3 | 1dplot -dx 0.001 -stdin

SEE ALSO

       libnifti(1), nifti_tool(1), nifti1_test(1).

       Homepage: http://niftilib.sourceforge.net

AUTHOR

       RW Cox - SSCC/NIMH/NIH/DHHS/USA/EARTH - March 2004

       This manual page was written by Michael Hanke <michael.hanke@gmail.com>, for the Debian project (but may be used by others).

nifti_stats							  September 2007						    NIFTI_STATS(1)

Check Out this Related Man Page

GIFTI_TEST(1)							   User Commands						     GIFTI_TEST(1)

NAME

       gifti_test - test reading/writing a GIFTI dataset

SYNOPSIS

       gifti_test [...]

OPTIONS

       -help  Show usage help.

       -gifti_hist
	      Show giftilib history.

       -gifti_ver
	      Show giftilib version.

       -encoding TYPE
	      Set the data encoding for any output file.

	      TYPE = ASCII	: ASCII encoding

	      TYPE = BASE64	: base64 binary

	      TYPE = BASE64GZIP : base64 compressed binary

       -gfile OUTPUT
	      Write out dataset as gifti image.

       -infile INPUT
	      Specify INPUT as the GIFTI dataset to read.

       -no_data
	      Do not write out data.

       -show  Show final gifti image.

       -slist LEN s0...
	      Restrict output to list of length LEN.

       -verb VERB
	      Set verbose level.

EXAMPLES

       1. read in a GIFTI dataset (verbose, show output?)

	      gifti_test -infile dset.gii

	      gifti_test -infile dset.gii -verb 3

	      gifti_test -infile dset.gii -show

       2. copy a GIFTI dataset (check differences?)

	      gifti_test -infile dset.gii -gfile copy.gii

	      diff dset.gii copy.gii

       3. copy a GIFTI data, but write out only 3 surf indices: 0,4,5

	      gifti_test -infile time_series.gii -gfile ts3.gii -slist 3 0 4 5

SEE ALSO

       Website: http://www.nitrc.org/projects/gifti

AUTHOR

       Richard Reynolds - SSCC, DIRP, NIMH, National Institutes of Health

       This manual page was written by Michael Hanke <michael.hanke@gmail.com>, for the Debian project (but may be used by others).

gifti_test							     June 2010							     GIFTI_TEST(1)
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