Query: glam2mask
OS: debian
Section: 1
Format: Original Unix Latex Style Formatted with HTML and a Horizontal Scroll Bar
GLAM2MASK(1) glam2 Manual GLAM2MASK(1)NAMEglam2mask - masks a GLAM2 motif in sequencesSYNOPSISglam2mask [options] my_motif.glam2 my_seqs.faDESCRIPTIONglam2mask masks a glam2 motif out of sequences, so that weaker motifs can be found. Masking replaces residues aligned to key positions with the symbol 'x'. By alternately applying glam2 and glam2mask several times, it is possible to find the strongest, second-strongest, third-strongest, etc. motifs in a set of sequences. OPTIONS (DEFAULT SETTINGS) -o Output file (stdout). -x Mask character (x).SEE ALSOglam2format(1), glam2(1), glam2-purge(1), glam2scan(1) The full Hypertext documentation of GLAM2 is available online at http://bioinformatics.org.au/glam2/ or on this computer in /usr/share/doc/glam2/.REFERENCEIf you use GLAM2, please cite: MC Frith, NFW Saunders, B Kobe, TL Bailey (2008) Discovering sequence motifs with arbitrary insertions and deletions, PLoS Computational Biology (in press).AUTHORSMartin Frith Author of GLAM2. Timothy Bailey Author of GLAM2. Charles Plessy <plessy@debian.org> Formatted this manpage in DocBook XML for the Debian distribution.COPYRIGHTThe source code and the documentation of GLAM2 are released in the public domain. GLAM2 1056 05/19/2008 GLAM2MASK(1)
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