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High Performance Linpack Compiling Issue

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Special Forums UNIX and Linux Applications High Performance Computing High Performance Linpack Compiling Issue
# 1  
Old 12-31-2011
High Performance Linpack Compiling Issue
I'm trying to compile Linpack on a Ubuntu cluster. I'm running MPI. I've modified the following values to fit my system TOPdir MPdir LAlib CC LINKER.
When compiling I get the following error: (the error is at the end, the other errors in between are because I've ran the script several times so some folders already exist)
Code:
administrator@..:~/hpl$ sudo make arch=LinuxGeneric
make -f Make.top startup_dir     arch=LinuxGeneric
make[1]: Entering directory `/home/administrator/hpl'
mkdir include/LinuxGeneric
mkdir: cannot create directory `include/LinuxGeneric': File exists
make[1]: [startup_dir] Error 1 (ignored)
mkdir lib
mkdir: cannot create directory `lib': File exists
make[1]: [startup_dir] Error 1 (ignored)
mkdir lib/LinuxGeneric
mkdir: cannot create directory `lib/LinuxGeneric': File exists
make[1]: [startup_dir] Error 1 (ignored)
mkdir bin
mkdir: cannot create directory `bin': File exists
make[1]: [startup_dir] Error 1 (ignored)
mkdir bin/LinuxGeneric
mkdir: cannot create directory `bin/LinuxGeneric': File exists
make[1]: [startup_dir] Error 1 (ignored)
make[1]: Leaving directory `/home/administrator/hpl'
make -f Make.top startup_src     arch=LinuxGeneric
make[1]: Entering directory `/home/administrator/hpl'
make -f Make.top leaf le=src/auxil       arch=LinuxGeneric
make[2]: Entering directory `/home/administrator/hpl'
( cd src/auxil ; mkdir LinuxGeneric )
mkdir: cannot create directory `LinuxGeneric': File exists
make[2]: [leaf] Error 1 (ignored)
( cd src/auxil/LinuxGeneric ; \
            ln -s /home/administrator/hpl/Make.LinuxGeneric Make.inc )
ln: creating symbolic link `Make.inc': File exists
make[2]: [leaf] Error 1 (ignored)
make[2]: Leaving directory `/home/administrator/hpl'
make -f Make.top leaf le=src/blas        arch=LinuxGeneric
make[2]: Entering directory `/home/administrator/hpl'
( cd src/blas ; mkdir LinuxGeneric )
mkdir: cannot create directory `LinuxGeneric': File exists
make[2]: [leaf] Error 1 (ignored)
( cd src/blas/LinuxGeneric ; \
            ln -s /home/administrator/hpl/Make.LinuxGeneric Make.inc )
ln: creating symbolic link `Make.inc': File exists
make[2]: [leaf] Error 1 (ignored)
make[2]: Leaving directory `/home/administrator/hpl'
make -f Make.top leaf le=src/comm        arch=LinuxGeneric
make[2]: Entering directory `/home/administrator/hpl'
( cd src/comm ; mkdir LinuxGeneric )
mkdir: cannot create directory `LinuxGeneric': File exists
make[2]: [leaf] Error 1 (ignored)
( cd src/comm/LinuxGeneric ; \
            ln -s /home/administrator/hpl/Make.LinuxGeneric Make.inc )
ln: creating symbolic link `Make.inc': File exists
make[2]: [leaf] Error 1 (ignored)
make[2]: Leaving directory `/home/administrator/hpl'
make -f Make.top leaf le=src/grid        arch=LinuxGeneric
make[2]: Entering directory `/home/administrator/hpl'
( cd src/grid ; mkdir LinuxGeneric )
mkdir: cannot create directory `LinuxGeneric': File exists
make[2]: [leaf] Error 1 (ignored)
( cd src/grid/LinuxGeneric ; \
            ln -s /home/administrator/hpl/Make.LinuxGeneric Make.inc )
ln: creating symbolic link `Make.inc': File exists
make[2]: [leaf] Error 1 (ignored)
make[2]: Leaving directory `/home/administrator/hpl'
make -f Make.top leaf le=src/panel       arch=LinuxGeneric
make[2]: Entering directory `/home/administrator/hpl'
( cd src/panel ; mkdir LinuxGeneric )
mkdir: cannot create directory `LinuxGeneric': File exists
make[2]: [leaf] Error 1 (ignored)
( cd src/panel/LinuxGeneric ; \
            ln -s /home/administrator/hpl/Make.LinuxGeneric Make.inc )
ln: creating symbolic link `Make.inc': File exists
make[2]: [leaf] Error 1 (ignored)
make[2]: Leaving directory `/home/administrator/hpl'
make -f Make.top leaf le=src/pauxil      arch=LinuxGeneric
make[2]: Entering directory `/home/administrator/hpl'
( cd src/pauxil ; mkdir LinuxGeneric )
mkdir: cannot create directory `LinuxGeneric': File exists
make[2]: [leaf] Error 1 (ignored)
( cd src/pauxil/LinuxGeneric ; \
            ln -s /home/administrator/hpl/Make.LinuxGeneric Make.inc )
ln: creating symbolic link `Make.inc': File exists
make[2]: [leaf] Error 1 (ignored)
make[2]: Leaving directory `/home/administrator/hpl'
make -f Make.top leaf le=src/pfact       arch=LinuxGeneric
make[2]: Entering directory `/home/administrator/hpl'
( cd src/pfact ; mkdir LinuxGeneric )
mkdir: cannot create directory `LinuxGeneric': File exists
make[2]: [leaf] Error 1 (ignored)
( cd src/pfact/LinuxGeneric ; \
            ln -s /home/administrator/hpl/Make.LinuxGeneric Make.inc )
ln: creating symbolic link `Make.inc': File exists
make[2]: [leaf] Error 1 (ignored)
make[2]: Leaving directory `/home/administrator/hpl'
make -f Make.top leaf le=src/pgesv       arch=LinuxGeneric
make[2]: Entering directory `/home/administrator/hpl'
( cd src/pgesv ; mkdir LinuxGeneric )
mkdir: cannot create directory `LinuxGeneric': File exists
make[2]: [leaf] Error 1 (ignored)
( cd src/pgesv/LinuxGeneric ; \
            ln -s /home/administrator/hpl/Make.LinuxGeneric Make.inc )
ln: creating symbolic link `Make.inc': File exists
make[2]: [leaf] Error 1 (ignored)
make[2]: Leaving directory `/home/administrator/hpl'
make[1]: Leaving directory `/home/administrator/hpl'
make -f Make.top startup_tst     arch=LinuxGeneric
make[1]: Entering directory `/home/administrator/hpl'
make -f Make.top leaf le=testing/matgen  arch=LinuxGeneric
make[2]: Entering directory `/home/administrator/hpl'
( cd testing/matgen ; mkdir LinuxGeneric )
mkdir: cannot create directory `LinuxGeneric': File exists
make[2]: [leaf] Error 1 (ignored)
( cd testing/matgen/LinuxGeneric ; \
            ln -s /home/administrator/hpl/Make.LinuxGeneric Make.inc )
ln: creating symbolic link `Make.inc': File exists
make[2]: [leaf] Error 1 (ignored)
make[2]: Leaving directory `/home/administrator/hpl'
make -f Make.top leaf le=testing/timer   arch=LinuxGeneric
make[2]: Entering directory `/home/administrator/hpl'
( cd testing/timer ; mkdir LinuxGeneric )
mkdir: cannot create directory `LinuxGeneric': File exists
make[2]: [leaf] Error 1 (ignored)
( cd testing/timer/LinuxGeneric ; \
            ln -s /home/administrator/hpl/Make.LinuxGeneric Make.inc )
ln: creating symbolic link `Make.inc': File exists
make[2]: [leaf] Error 1 (ignored)
make[2]: Leaving directory `/home/administrator/hpl'
make -f Make.top leaf le=testing/pmatgen arch=LinuxGeneric
make[2]: Entering directory `/home/administrator/hpl'
( cd testing/pmatgen ; mkdir LinuxGeneric )
mkdir: cannot create directory `LinuxGeneric': File exists
make[2]: [leaf] Error 1 (ignored)
( cd testing/pmatgen/LinuxGeneric ; \
            ln -s /home/administrator/hpl/Make.LinuxGeneric Make.inc )
ln: creating symbolic link `Make.inc': File exists
make[2]: [leaf] Error 1 (ignored)
make[2]: Leaving directory `/home/administrator/hpl'
make -f Make.top leaf le=testing/ptimer  arch=LinuxGeneric
make[2]: Entering directory `/home/administrator/hpl'
( cd testing/ptimer ; mkdir LinuxGeneric )
mkdir: cannot create directory `LinuxGeneric': File exists
make[2]: [leaf] Error 1 (ignored)
( cd testing/ptimer/LinuxGeneric ; \
            ln -s /home/administrator/hpl/Make.LinuxGeneric Make.inc )
ln: creating symbolic link `Make.inc': File exists
make[2]: [leaf] Error 1 (ignored)
make[2]: Leaving directory `/home/administrator/hpl'
make -f Make.top leaf le=testing/ptest   arch=LinuxGeneric
make[2]: Entering directory `/home/administrator/hpl'
( cd testing/ptest ; mkdir LinuxGeneric )
mkdir: cannot create directory `LinuxGeneric': File exists
make[2]: [leaf] Error 1 (ignored)
( cd testing/ptest/LinuxGeneric ; \
            ln -s /home/administrator/hpl/Make.LinuxGeneric Make.inc )
ln: creating symbolic link `Make.inc': File exists
make[2]: [leaf] Error 1 (ignored)
make[2]: Leaving directory `/home/administrator/hpl'
make[1]: Leaving directory `/home/administrator/hpl'
make -f Make.top refresh_src     arch=LinuxGeneric
make[1]: Entering directory `/home/administrator/hpl'
cp makes/Make.auxil    src/auxil/LinuxGeneric/Makefile
cp makes/Make.blas     src/blas/LinuxGeneric/Makefile
cp makes/Make.comm     src/comm/LinuxGeneric/Makefile
cp makes/Make.grid     src/grid/LinuxGeneric/Makefile
cp makes/Make.panel    src/panel/LinuxGeneric/Makefile
cp makes/Make.pauxil   src/pauxil/LinuxGeneric/Makefile
cp makes/Make.pfact    src/pfact/LinuxGeneric/Makefile
cp makes/Make.pgesv    src/pgesv/LinuxGeneric/Makefile
make[1]: Leaving directory `/home/administrator/hpl'
make -f Make.top refresh_tst     arch=LinuxGeneric
make[1]: Entering directory `/home/administrator/hpl'
cp makes/Make.matgen   testing/matgen/LinuxGeneric/Makefile
cp makes/Make.timer    testing/timer/LinuxGeneric/Makefile
cp makes/Make.pmatgen  testing/pmatgen/LinuxGeneric/Makefile
cp makes/Make.ptimer   testing/ptimer/LinuxGeneric/Makefile
cp makes/Make.ptest    testing/ptest/LinuxGeneric/Makefile
make[1]: Leaving directory `/home/administrator/hpl'
make -f Make.top refresh_src     arch=LinuxGeneric
make[1]: Entering directory `/home/administrator/hpl'
cp makes/Make.auxil    src/auxil/LinuxGeneric/Makefile
cp makes/Make.blas     src/blas/LinuxGeneric/Makefile
cp makes/Make.comm     src/comm/LinuxGeneric/Makefile
cp makes/Make.grid     src/grid/LinuxGeneric/Makefile
cp makes/Make.panel    src/panel/LinuxGeneric/Makefile
cp makes/Make.pauxil   src/pauxil/LinuxGeneric/Makefile
cp makes/Make.pfact    src/pfact/LinuxGeneric/Makefile
cp makes/Make.pgesv    src/pgesv/LinuxGeneric/Makefile
make[1]: Leaving directory `/home/administrator/hpl'
make -f Make.top refresh_tst     arch=LinuxGeneric
make[1]: Entering directory `/home/administrator/hpl'
cp makes/Make.matgen   testing/matgen/LinuxGeneric/Makefile
cp makes/Make.timer    testing/timer/LinuxGeneric/Makefile
cp makes/Make.pmatgen  testing/pmatgen/LinuxGeneric/Makefile
cp makes/Make.ptimer   testing/ptimer/LinuxGeneric/Makefile
cp makes/Make.ptest    testing/ptest/LinuxGeneric/Makefile
make[1]: Leaving directory `/home/administrator/hpl'
make -f Make.top build_src       arch=LinuxGeneric
make[1]: Entering directory `/home/administrator/hpl'
( cd src/auxil/LinuxGeneric;         make )
make[2]: Entering directory `/home/administrator/hpl/src/auxil/LinuxGeneric'
ar r /home/administrator/hpl/lib/Linux_PII_FBLAS/libhpl.a  HPL_dlacpy.o           HPL_dlatcpy.o          HPL_fprintf.o HPL_warn.o             HPL_abort.o            HPL_dlaprnt.o HPL_dlange.o HPL_dlamch.o
ar: /home/administrator/hpl/lib/Linux_PII_FBLAS/libhpl.a: No such file or directory
make[2]: *** [lib.grd] Error 1
make[2]: Leaving directory `/home/administrator/hpl/src/auxil/LinuxGeneric'
make[1]: *** [build_src] Error 2
make[1]: Leaving directory `/home/administrator/hpl'
make: *** [build] Error 2

Can anyone help me with this?
Last edited by vbe; 12-31-2011 at 11:53 AM.. Reason: please use code tags for your code and data next time
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