Hi guys,
Can you help me in solving ths problem?
I have two files file1 and file2 as following:
===FILE1====
>LOC21
MASSKFCTVLSLALFLVLLTHANSAELFSFNFQTFNAANLILQGNASVSSSGQLRLTEVKSNGEPKVASL
VASFATAFTFNILAPILSNSADGLAFALVPVGSQPKFNGGFLGLFQNVTYDP
>LOC05... (11 Replies)
Hi All,
as you can see I'm pretty new to this board. :D
I'm struggling around with small script to search a few fields in another file.
Basically I have file1 looking like this:
15:38:28 sz:10001 pr:14.16
15:38:28 sz:10002 pr:18.41
15:38:29 sz:10003 pr:19.28
15:38:30 sz:10004... (1 Reply)
Hi there,
I know the command diff but what I want is slightly different.
I have two files containing lines that look like md5sums.
file1
5a1e8cee2eb2157c86e7266ee38e47c3 /tmp/file1
a254c48bdd064a40b82477b9fa5be05d /tmp/file2
2d57c72ec898acddf8a6bacb3f821572 /tmp/file3... (5 Replies)
Hi All,
I have to arrange one of the text file by deleting specific lines.
cat file1.txt
3595 3595 -0.00842773 -0.0085077 0.00368851
12815 12815 -0.00929239 0.00439785 0.0291697
3747 3747 -0.00974353 0.00228922 0.0225058
3574 3574 -0.00711399 -0.00315748 0.0141206
....
12734... (7 Replies)
Hello,
I have two data files:
file1
12345 aa bbb cccc
98765 qq www uuuu
76543 pp rrr bbbbb
34567 nn ccc sssss
87654 qq ppp rrrrr
file2
98765
34567
I need to remove the lines from file1 if the first field contains a value that appears in file2:
output
12345 aa bbb cccc
76543 pp... (2 Replies)
I have very limited coding skills but I'm wondering if someone could help me with this. There are many threads about matching strings in two files, but I have no idea how to add a column from one file to another based on a matching string.
I'm looking to match column1 in file1 to the number... (3 Replies)
I have 2 files with 7 fields and i want to print the lines which is present in file1 but not in file2 based on field1 and field2.
Logic: I want to print all the lines, where there is a particular column1 and column2. And we do not find the set of column1 and column2 in file2.
Example: "sc2/10... (3 Replies)
I have two files.
File 1 is a two-column index file, e.g.
comp11084_c0_seq6:130-468(-) comp12746_c0_seq3:140-478(+)
comp11084_c0_seq3:201-539(-) comp12746_c0_seq2:191-529(+)
File 2 is a sequence file with headers named with the same terms that populate file 1. ... (1 Reply)
Hi,
I am running my pipeline and capturing all stout from multiple programs to a .txt file. I want to go into that .txt file and search for specific lines, and finally print those lines in a second .txt file.
I can do this using grep, awk, or sed for each line, but have not been able to get... (2 Replies)
I want to print only the lines in file2 that match file1, in the same order as they appear in file 1
file1
file2
desired output:
I'm getting the lines to match
awk 'FNR==NR {a++}; FNR!=NR && a' file1 file2
but they are in sorted order, which is not what I want:
Can anyone... (4 Replies)
Discussion started by: pathunkathunk
4 Replies
LEARN ABOUT FREEBSD
merge
MERGE(1) General Commands Manual MERGE(1)NAME
merge - three-way file merge
SYNOPSIS
merge [ options ] file1 file2 file3
DESCRIPTION
merge incorporates all changes that lead from file2 to file3 into file1. The result ordinarily goes into file1. merge is useful for com-
bining separate changes to an original. Suppose file2 is the original, and both file1 and file3 are modifications of file2. Then merge
combines both changes.
A conflict occurs if both file1 and file3 have changes in a common segment of lines. If a conflict is found, merge normally outputs a
warning and brackets the conflict with <<<<<<< and >>>>>>> lines. A typical conflict will look like this:
<<<<<<< file A
lines in file A
=======
lines in file B
>>>>>>> file B
If there are conflicts, the user should edit the result and delete one of the alternatives.
OPTIONS -A Output conflicts using the -A style of diff3(1), if supported by diff3. This merges all changes leading from file2 to file3 into
file1, and generates the most verbose output.
-E, -e These options specify conflict styles that generate less information than -A. See diff3(1) for details. The default is -E. With
-e, merge does not warn about conflicts.
-L label
This option may be given up to three times, and specifies labels to be used in place of the corresponding file names in conflict
reports. That is, merge -L x -L y -L z a b c generates output that looks like it came from files x, y and z instead of from files
a, b and c.
-p Send results to standard output instead of overwriting file1.
-q Quiet; do not warn about conflicts.
-V Print RCS's version number.
DIAGNOSTICS
Exit status is 0 for no conflicts, 1 for some conflicts, 2 for trouble.
IDENTIFICATION
Author: Walter F. Tichy.
Manual Page Revision: 1999-08-27; Release Date: 23:37:10Z.
Copyright (C) 1982, 1988, 1989 Walter F. Tichy.
Copyright (C) 1990, 1991, 1992, 1993, 1994, 1995 Paul Eggert.
SEE ALSO diff3(1), diff(1), rcsmerge(1), co(1).
BUGS
It normally does not make sense to merge binary files as if they were text, but merge tries to do it anyway.
GNU 23:37:10Z MERGE(1)