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Full Discussion: False positive grep?
Top Forums Shell Programming and Scripting False positive grep? Post 303045952 by MadeInGermany on Sunday 19th of April 2020 08:21:18 AM
Old 04-19-2020
That explains it; and your photo shows a non-ascii character.
It's not sufficient to sort out [a-zA-Z].

With an ERE you can ensure the input is a number:
Code:
[[ $NUM =~ ^[0-9]+$ ]] || continue
echo "$NUM is a positive integer"

Code:
[[ $NUM =~ ^-?[0-9]+$ ]] || continue
echo "$NUM is an integer"

RHS == right hand side
This User Gave Thanks to MadeInGermany For This Post:
 

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ClonalFrame(1)						      General Commands Manual						    ClonalFrame(1)

NAME
ClonalFrame - inference of bacterial microevolution using multilocus sequence data SYNOPSIS
ClonalFrame [OPTIONS] inputfile outputfile DESCRIPTION
ClonalFrame identifies the clonal relationships between the members of a sample, while also estimating the chromosomal position of homolo- gous recombination events that have disrupted the clonal inheritance. Options: -x NUM Sets the number of iterations after burn-in (default is 50000) -y NUM Sets the number of burn-in iterations (default is 50000) -z NUM Sets the number of iterations between samples (default is 100) -e NUM Sets the number of branch-swapping moves per iterations (default is so that half of the time is spent branch-swapping) -m NUM Sets the initial value of theta to NUM (default is Watterson estimate) -d NUM Sets the initial value of delta to NUM (default is 0.001) -n NUM Sets the initial value of nu to NUM (default is 0.01) -r NUM Sets the initial value of R to NUM (default is initial theta/10) -M Do update the value of theta -D Do not update the value of delta -N Do not update the value of nu -R Do not update the value of R -T Do not update the topology -A Do not update the ages of the nodes -G Remove all gaps -H Remove all gaps at non-polymorphic positions -t NUM Indicate which initial tree to use: 0 for a null tree, 1 for a uniformly chosen coalescent tree and 2 for UPGMA tree (default) -w FILE Use Newick file for initial tree -a NUM Sets the first parameter of the beta prior distribution of nu -b NUM Sets the second parameter of the beta prior distribution of nu -U Use uniform priors for rho, theta and delta -B Run in BURST mode -C Run in UPGMA mode with a site-by-site bootstrap procedure -c Run in UPGMA mode with a fragment-by-fragment bootstrap procedure -S NUM Sets the seed for the random number generator to NUM -E NUM Sets the rate of exponential growth (default is 0) -I Ignores first block in the alignment -L Clean-up the alignment before running ClonalFrame -l Minimum distance between two reference sites (default is 50) -v Verbose mode AUTHOR
ClonalFrame was written by Xavier Didelot. This manual page was written by Andreas Tille <tille@debian.org>, for the Debian project (but may be used by others). February 2011 1.2 ClonalFrame(1)
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