I do remember you being quite concerned with performance in this SWARM stuff and I would have thought the bash =~ operator could be use in place of grep.
Twice as fast on my system, but your mileage may vary
This User Gave Thanks to Chubler_XL For This Post:
We have requirments to not allow a userid login abilities but allow users to 'su' to it. In solaris I normally set the shell in /etc/passwd to bin/false. THis does not work on Linux, any suggestions would help. (1 Reply)
i want to delete every newline and every line which starts with "RECORD......." in a file.
FILE:
Record 61391 in base BROCKHAUS (Timestamp: 2008-04-09 11:38:38)
UNTERTITEL :
Gräfin (seit 1707 Reichsgräfin) von, * Schwerin 4. 2. 1686, + Berlin
21. 10. 1744; wurde
Record 61392 in base BROCKHAUS... (4 Replies)
Hi,
I'm new to UNIX and am trying to learn shell scripting in order to work on an interface that I inherited when a co-worker left. I need to be able to check to see whether a file exists to determine whether the FTP has taken place, but in testing, the if statement always evaluates as false,... (3 Replies)
Hi All,
I am using the below Script to enter a line in the File:
#!/bin/ksh
# To delete the last line if it contains the pattern Redirect permanent / Virgin Atlantic Airways - Popup
echo "Enter the URL that should point to the particular microsite"
read url
# To delete the last line if it... (0 Replies)
Why this happens?
How to solve this?
$netstat -na |grep 9325
tcp 0 0 127.0.0.1:9325 127.0.0.1:9325 ESTABLISHED
When a client socket repeatedly tries to connect to an inactive(no server socket is listening on this port) local port,connect succeeds.
... (1 Reply)
Checking configuration access files for an AIX server, left me wondering about this :confused::
If a user is added to system group, it gets gid=0 with some security risks because it gets some root kind of file access level.
Is this insecure condition kept if the user has admin variable... (0 Replies)
I have read the below from the book bash cookbook.Tail +1 filenames is similar to cat filename
I have tried the same in Ubuntu 11.10 with bash. 4.0 .
I have received error for the Same.
May I know in which system that will work fine ?
Thanks (1 Reply)
Hi
I have written a script to send email alerts when load of my linux server reaches max point
I keep getting false emails thought the load is normal , looks like same email is generated again and again - called from cron tab
checked if the tempfile is present , no it is not , cleaned... (22 Replies)
Discussion started by: anil529
22 Replies
LEARN ABOUT DEBIAN
clonalframe
ClonalFrame(1) General Commands Manual ClonalFrame(1)NAME
ClonalFrame - inference of bacterial microevolution using multilocus sequence data
SYNOPSIS
ClonalFrame [OPTIONS] inputfile outputfile
DESCRIPTION
ClonalFrame identifies the clonal relationships between the members of a sample, while also estimating the chromosomal position of homolo-
gous recombination events that have disrupted the clonal inheritance.
Options:
-x NUM Sets the number of iterations after burn-in (default is 50000)
-y NUM Sets the number of burn-in iterations (default is 50000)
-z NUM Sets the number of iterations between samples (default is 100)
-e NUM Sets the number of branch-swapping moves per iterations (default is so that half of the time is spent branch-swapping)
-m NUM Sets the initial value of theta to NUM (default is Watterson estimate)
-d NUM Sets the initial value of delta to NUM (default is 0.001)
-n NUM Sets the initial value of nu to NUM (default is 0.01)
-r NUM Sets the initial value of R to NUM (default is initial theta/10)
-M Do update the value of theta
-D Do not update the value of delta
-N Do not update the value of nu
-R Do not update the value of R
-T Do not update the topology
-A Do not update the ages of the nodes
-G Remove all gaps
-H Remove all gaps at non-polymorphic positions
-t NUM Indicate which initial tree to use: 0 for a null tree, 1 for a uniformly chosen coalescent tree and 2 for UPGMA tree (default)
-w FILE
Use Newick file for initial tree
-a NUM Sets the first parameter of the beta prior distribution of nu
-b NUM Sets the second parameter of the beta prior distribution of nu
-U Use uniform priors for rho, theta and delta
-B Run in BURST mode
-C Run in UPGMA mode with a site-by-site bootstrap procedure
-c Run in UPGMA mode with a fragment-by-fragment bootstrap procedure
-S NUM Sets the seed for the random number generator to NUM
-E NUM Sets the rate of exponential growth (default is 0)
-I Ignores first block in the alignment
-L Clean-up the alignment before running ClonalFrame
-l Minimum distance between two reference sites (default is 50)
-v Verbose mode
AUTHOR
ClonalFrame was written by Xavier Didelot.
This manual page was written by Andreas Tille <tille@debian.org>, for the Debian project (but may be used by others).
February 2011 1.2 ClonalFrame(1)