How find lines, export sum into file? Post: 303045674

10 More Discussions You Might Find Interesting

1. Shell Programming and Scripting

how to get the sum of all the lines in the file

Hi I have the following file, how I will calculate the sum of all the entries in the file. > cat abc 2 3 4 now the sum should be 2+3+4 = 9

2. Shell Programming and Scripting

awk/sed Command : Parse parameter file / send the lines to the ksh export command

Sorry for the duplicate thread this one is similar to the one in https://www.unix.com/shell-programming-scripting/88132-awk-sed-script-read-values-parameter-files.html#post302255121 Since there were no responses on the parent thread since it got resolved partially i thought to open the new...

3. Shell Programming and Scripting

Sum of all lines in file without roundup with awk

Hi, I have a file and I want to sum all the numbers in it. Example of the file: 0.6714359 -3842.59553830551 I used your forum (https://www.unix.com/shell-programming-scripting/74293-how-get-sum-all-lines-file.html) and found a script, what worked for me: awk '{a+=$0}END{print a}'...

4. Shell Programming and Scripting

find string(s) in text file and nearby data, export to list help

Hi, So I'm kinda new to shell scripts and the like. I've picked up quite a bit of use from browsing the forums here but ran into a new one that I can't seem to find an answer for. I'm looking to parse/find a string AND the next 15 or so charachters that follow the string within a text file...

5. Shell Programming and Scripting

Summing over specific lines and replacing the lines with the sum using sed, awk

Hi friends, This is sed & awk type question. I have a text file which has numbers spread all over the file. I want to sum the series of numbers whenever i find it and produce an output file with the sum. For example ###start of input text file #### abc def ghi 1 2 3 4 kjld random...

6. Shell Programming and Scripting

Summing over specific lines and replacing the lines with the sum

Hi friends, This is sed & awk type question. It is slightly different from my previous question. I have a text file which has numbers spread all over the file. I want to sum the series of numbers (but no more than 10 numbers in series) whenever i find it and produce an output file with the...

7. UNIX for Dummies Questions & Answers

How to export some lines from a file to a new file?

Dear everyone, I have a big file with many information in it, but I just want some lines. I don't know exactly what the number of the line I want, I only know some part of these line. It all starts with the word 'F(tot :1 )' I use grep command and find it. It looks like that on the screen:...

8. Shell Programming and Scripting

How to find sum of any 'n' number of values from file matching target value?

I have a simple text file having payment amount value on each line. At the end of day 'n' number of payments created difference in amount that I need to match from this file. I have information about how many payments created difference and difference amount. Please help me to build shell...

9. Shell Programming and Scripting

Sum product of even/odd lines

Hi, I have a text file like this 6.0000E-02 0.00000E+00 0.0000 0.00000E+00 0.0000 7.0000E-02 5.00000E-10 1.0000 5.00000E-10 1.0000 8.0000E-02 3.00000E-09 0.4082 3.00000E-09 0.4082 9.0000E-02 3.50000E-09 0.3780 3.50000E-09 0.3780 1.0000E-01 1.00000E-09...

10. Shell Programming and Scripting

Find all lines in file such that each word on that line appears in at least n lines of the file

I have a file where every line includes four expressions with a caret in the middle (plus some other "words" or fields, always separated by spaces). I would like to extract from this file, all those lines such that each of the four expressions containing a caret appears in at least four different...

LEARN ABOUT DEBIAN

clonalframe

ClonalFrame(1)						      General Commands Manual						    ClonalFrame(1)

NAME

       ClonalFrame - inference of bacterial microevolution using multilocus sequence data

SYNOPSIS

       ClonalFrame [OPTIONS] inputfile outputfile

DESCRIPTION

       ClonalFrame  identifies the clonal relationships between the members of a sample, while also estimating the chromosomal position of homolo-
       gous recombination events that have disrupted the clonal inheritance.

       Options:

       -x NUM Sets the number of iterations after burn-in (default is 50000)

       -y NUM Sets the number of burn-in iterations (default is 50000)

       -z NUM Sets the number of iterations between samples (default is 100)

       -e NUM Sets the number of branch-swapping moves per iterations (default is so that half of the time is spent branch-swapping)

       -m NUM Sets the initial value of theta to NUM (default is Watterson estimate)

       -d NUM Sets the initial value of delta to NUM (default is 0.001)

       -n NUM Sets the initial value of nu to NUM (default is 0.01)

       -r NUM Sets the initial value of R to NUM (default is initial theta/10)

       -M     Do update the value of theta

       -D     Do not update the value of delta

       -N     Do not update the value of nu

       -R     Do not update the value of R

       -T     Do not update the topology

       -A     Do not update the ages of the nodes

       -G     Remove all gaps

       -H     Remove all gaps at non-polymorphic positions

       -t NUM Indicate which initial tree to use: 0 for a null tree, 1 for a uniformly chosen coalescent tree and 2 for UPGMA tree (default)

       -w FILE
	      Use Newick file for initial tree

       -a NUM Sets the first parameter of the beta prior distribution of nu

       -b NUM Sets the second parameter of the beta prior distribution of nu

       -U     Use uniform priors for rho, theta and delta

       -B     Run in BURST mode

       -C     Run in UPGMA mode with a site-by-site bootstrap procedure

       -c     Run in UPGMA mode with a fragment-by-fragment bootstrap procedure

       -S NUM Sets the seed for the random number generator to NUM

       -E NUM Sets the rate of exponential growth (default is 0)

       -I     Ignores first block in the alignment

       -L     Clean-up the alignment before running ClonalFrame

       -l     Minimum distance between two reference sites (default is 50)

       -v     Verbose mode

AUTHOR

       ClonalFrame was written by Xavier Didelot.

       This manual page was written by Andreas Tille <tille@debian.org>, for the Debian project (but may be used by others).

February 2011								1.2							    ClonalFrame(1)