Sponsored Content
Top Forums UNIX for Beginners Questions & Answers awk to convert dict file to table format Post 303045533 by biofreek on Monday 30th of March 2020 10:10:32 PM
Old 03-30-2020
awk to convert dict file to table format

HI
I have a file that looks like below

Code:
abc
{Seq('GATAGC', SingleLetterAlphabet()): 1, Seq('ATAGCG', SingleLetterAlphabet()): 1, Seq('TAGCGG', SingleLetterAlphabet()): 1}
BBC
{Seq('AGGATA', SingleLetterAlphabet()): 1, Seq('GGATAG', SingleLetterAlphabet()): 1, Seq('GATAGC', SingleLetterAlphabet()): 1, Seq('ATAGCG', SingleLetterAlphabet()): 1, Seq('TAGCGG', SingleLetterAlphabet()): 1}
CCB
{Seq('GACGGA', SingleLetterAlphabet()): 1, Seq('ACGGAT', SingleLetterAlphabet()): 1, Seq('CGGATA', SingleLetterAlphabet()): 1, Seq('GGATAG', SingleLetterAlphabet()): 1, Seq('GATAGC', SingleLetterAlphabet()): 1, Seq('ATAGCG', SingleLetterAlphabet()): 1, Seq('TAGCGG', SingleLetterAlphabet()): 1}

I wanted to get something like:
Code:
abc GATAGC
abc ATAGCG
abc TAGCGG
BBC AGGATA
---------------

I have been trying to get the solution in python but wth less success. Is there any easy way to do it in awk?
 

8 More Discussions You Might Find Interesting

1. UNIX for Advanced & Expert Users

Convert UTF8 Format file to ANSI format

:) Hi i am trying to convert a file which is in UTF8 format to ANSI format i tried to use the function ICONV but it is throwing error Function i used it as $ iconv -f UTF8 -t ANSI filename Error iam getting is NOT Supported UTF8 to ANSI please some help me out on this.........Let me... (1 Reply)
Discussion started by: rajreddy
1 Replies

2. UNIX for Dummies Questions & Answers

Convert UTF8 Format file to ANSI format

:confused: Hi i am trying to convert a file which is in UTF8 format to ANSI format i tried to use the function ICONV but it is throwing error Function i used it as $ iconv -f UTF8 -t ANSI filename Error iam getting is NOT Supported UTF8 to ANSI please some help me out on... (9 Replies)
Discussion started by: rajreddy
9 Replies

3. UNIX for Dummies Questions & Answers

To convert multi format file to a readable ascii format

Hi I have a file which has ascii , binary, binary decimal coded,decimal & hexadecimal data with lot of special characters (like öƒ.ƒ.„İİ¡Š·œƒ.„İİ¡Š· ) in it. I want to standardize the file into ASCII format & later use that as source . Can any one suggest a way a logic to convert such... (5 Replies)
Discussion started by: gaur.deepti
5 Replies

4. UNIX for Dummies Questions & Answers

Convert UNIX file format to PC format

Hi All, Is there any way to convert a file which is in UNIX format to a PC format.... Flip command can be used , apart form this command can we have any other way.... like usinf "awk" etc ..... main purpose of not using flip is that my Kshell doesnot support this comamnd.... (1 Reply)
Discussion started by: Samtel
1 Replies

5. Programming

awk script to convert a text file into csv format

hi...... thanks for allowing me to start a discussion i am collecting usb usage details of all users and convert it into csv files so that i can export it into some database.. the input text file is as follows:- USB History Dump by nabiy (c)2008 (1) --- Kingston DataTraveler 130 USB... (2 Replies)
Discussion started by: certteam
2 Replies

6. Shell Programming and Scripting

convert the output in table format

Hi All, I have a output like below values val1=test.com val2=10.26.208.11 val3=en1 val4=test-priv1.com val5=192.168.3.4 val6=en2 val7=test-priv2.com val8=192.168.4.4 val9=en3 val10=test-vip.com val11=10.26.208.9 val12=$val3 I want to convet this output values into below... (1 Reply)
Discussion started by: kamauv234
1 Replies

7. Shell Programming and Scripting

awk to convert table-by-row to matrix table

Hello, I need some help to reformat this table-by-row to matrix? infile: site1 A:o,p,q,r,s,t site1 C:y,u site1 T:v,w site1 -:x,z site2 A:p,r,t,v,w,z site2 C:u,y site2 G:q,s site2 -:o,x site3 A:o,q,s,t,u,z site3 C:y site3 T:v,w,x site3 -:p,routfile: SITE o p q r s t v u w x y... (7 Replies)
Discussion started by: yifangt
7 Replies

8. Shell Programming and Scripting

Convert rows into columns and create table with awk

Hello I've four fields . They are First Name, Last Name, Age, Country. So when I run a Unix command, I get below output with these fields comes every time in different order as you can see. Some times first name is the first row and other time last name is first row in the output and etc etc..... (9 Replies)
Discussion started by: rprpr
9 Replies
TAU_CONVERT(1)							       Tools							    TAU_CONVERT(1)

NAME
tau_convert - convert TAU tracefiles into various alternative trace formats SYNOPSIS
tau_convert [[-alog] [-SSDF] [-dump] [-paraver [-t]] [-pv] [-vampir [ -longsymbolbugfix ] [ -compact ] [[ -user ] [ -class ] [ -all ]] [ -nocomm ]]] [outputtrc] {inputtrc} {edffile} DESCRIPTION
tau_convert is generated when TAU is configured with the -TRACE option. This program requires specification of a TAU tracefile and eventfile. It will convert the given TAU traces to the ASCII-based trace format specified in the first argument. The conversion type specification may be followed by additional options specific to the conversion type. It defaults to the single threaded vampir format if no other format is specified. tau_convert also accepts specification of an output file as the last argument. If none is given it prints the converted data to the standard out. OPTIONS
-alog convert TAU tracefile into the alog format (This format is deprecated. The SLOG2 format is recommended.) -SDDF convert TAU tracefile into the SDDF format -dump convert TAU tracefile into multi-column human readable text -paraver convert TAU tracefile into paraver format -t indicate conversion of multi threaded TAU trace into paraver format -pv convert single threaded TAU tracefile into vampir format (all -vampir options apply) (default) -vampir convert multi threaded TAU tracefile into vampir format -longsymbolbugfix make the first characters of long, similar identifier strings unique to avoid a bug in vampir -compact abbreviate individual event entries -all compact all entries (default) -user compact user entries only -class compact class entries only -nocomm disregard communication events [outputtrc] specify the name of the output tracefile to be produced EXAMPLES
To print the contents of a TAU tracefile to the screen: tau_convert -dump app.trc tau.edf To convert a merged, threaded TAU tracefile to paraver format: tau_convert -paraver -t app.trc tau.edf app.pv SEE ALSO
tau_merge(1), tau2vtf(1), tau2profile(1), tau2slog2(1) 12/22/2005 TAU_CONVERT(1)
All times are GMT -4. The time now is 08:49 AM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy