:) Hi
i am trying to convert a file which is in UTF8 format to ANSI format i tried to use the function ICONV but it is throwing error
Function i used it as
$ iconv -f UTF8 -t ANSI filename
Error iam getting is NOT Supported UTF8 to ANSI
please some help me out on this.........Let me... (1 Reply)
:confused: Hi
i am trying to convert a file which is in UTF8 format to ANSI format i tried to use the function ICONV but it is throwing error
Function i used it as
$ iconv -f UTF8 -t ANSI filename
Error iam getting is NOT Supported UTF8 to ANSI
please some help me out on... (9 Replies)
Hi
I have a file which has ascii , binary, binary decimal coded,decimal & hexadecimal data with lot of special characters (like öƒ.ƒ.„İİ¡Š·œƒ.„İİ¡Š· ) in it. I want to standardize the file into ASCII format & later use that as source .
Can any one suggest a way a logic to convert such... (5 Replies)
Hi All,
Is there any way to convert a file which is in UNIX format to a PC format....
Flip command can be used , apart form this command can we have any other way.... like usinf "awk" etc ..... main purpose of not using flip is that my Kshell doesnot support this comamnd.... (1 Reply)
hi...... thanks for allowing me to start a discussion
i am collecting usb usage details of all users and convert it into csv files so that i can export it into some database..
the input text file is as follows:-
USB History Dump
by nabiy (c)2008
(1) --- Kingston DataTraveler 130 USB... (2 Replies)
Hi All,
I have a output like below values
val1=test.com
val2=10.26.208.11
val3=en1
val4=test-priv1.com
val5=192.168.3.4
val6=en2
val7=test-priv2.com
val8=192.168.4.4
val9=en3
val10=test-vip.com
val11=10.26.208.9
val12=$val3
I want to convet this output values into below... (1 Reply)
Hello,
I need some help to reformat this table-by-row to matrix?
infile:
site1 A:o,p,q,r,s,t
site1 C:y,u
site1 T:v,w
site1 -:x,z
site2 A:p,r,t,v,w,z
site2 C:u,y
site2 G:q,s
site2 -:o,x
site3 A:o,q,s,t,u,z
site3 C:y
site3 T:v,w,x
site3 -:p,routfile:
SITE o p q r s t v u w x y... (7 Replies)
Hello
I've four fields . They are First Name, Last Name, Age, Country. So when I run a Unix command, I get below output with these fields comes every time in different order as you can see. Some times first name is the first row and other time last name is first row in the output and etc etc..... (9 Replies)
Discussion started by: rprpr
9 Replies
LEARN ABOUT DEBIAN
bio::seq::largelocatableseq
Bio::Seq::LargeLocatableSeq(3pm) User Contributed Perl Documentation Bio::Seq::LargeLocatableSeq(3pm)NAME
Bio::Seq::LargeLocatableSeq - LocatableSeq object that stores sequence as files in the tempdir
SYNOPSIS
# normal primary seq usage
use Bio::Seq::LargeLocatableSeq;
my $seq = Bio::Seq::LargeLocatableSeq->new(-seq => "CAGT-GGT",
-id => "seq1",
-start => 1,
-end => 7);
DESCRIPTION
Bio::Seq::LargeLocatableSeq - object with start/end points on it that can be projected into a MSA or have coordinates relative to another
seq.
This object, unlike Bio::LocatableSeq, stores a sequence as a series of files in a temporary directory. The aim is to allow someone the
ability to store very large sequences (eg, > 100MBases) in a file system without running out of memory (eg, on a 64 MB real memory
machine!).
Of course, to actually make use of this functionality, the programs which use this object must not call $primary_seq->seq otherwise the
entire sequence will come out into memory and probably crash your machine. However, calls like $primary_seq->subseq(10,100) will cause only
90 characters to be brought into real memory.
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the
Bioperl mailing list. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
it. Please include a thorough description of the problem with code and data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the
web:
https://redmine.open-bio.org/projects/bioperl/
AUTHOR - Albert Vilella
Email avilella-AT-gmail-DOT-com
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
new
Title : new
Usage : my $obj = Bio::Seq::LargeLocatableSeq->new();
Function: Builds a new Bio::Seq::LargeLocatableSeq object
Returns : an instance of Bio::Seq::LargeLocatableSeq
Args :
length
Title : length
Usage :
Function:
Example :
Returns :
Args :
seq
Title : seq
Usage :
Function:
Example :
Returns :
Args :
subseq
Title : subseq
Usage :
Function:
Example :
Returns :
Args :
add_sequence_as_string
Title : add_sequence_as_string
Usage : $seq->add_sequence_as_string("CATGAT");
Function: Appends additional residues to an existing LargeLocatableSeq object.
This allows one to build up a large sequence without storing
entire object in memory.
Returns : Current length of sequence
Args : string to append
_filename
Title : _filename
Usage : $obj->_filename($newval)
Function:
Example :
Returns : value of _filename
Args : newvalue (optional)
alphabet
Title : alphabet
Usage : $obj->alphabet($newval)
Function:
Example :
Returns : value of alphabet
Args : newvalue (optional)
perl v5.14.2 2012-03-02 Bio::Seq::LargeLocatableSeq(3pm)