:) Hi
i am trying to convert a file which is in UTF8 format to ANSI format i tried to use the function ICONV but it is throwing error
Function i used it as
$ iconv -f UTF8 -t ANSI filename
Error iam getting is NOT Supported UTF8 to ANSI
please some help me out on this.........Let me... (1 Reply)
:confused: Hi
i am trying to convert a file which is in UTF8 format to ANSI format i tried to use the function ICONV but it is throwing error
Function i used it as
$ iconv -f UTF8 -t ANSI filename
Error iam getting is NOT Supported UTF8 to ANSI
please some help me out on... (9 Replies)
Hi
I have a file which has ascii , binary, binary decimal coded,decimal & hexadecimal data with lot of special characters (like öƒ.ƒ.„İİ¡Š·œƒ.„İİ¡Š· ) in it. I want to standardize the file into ASCII format & later use that as source .
Can any one suggest a way a logic to convert such... (5 Replies)
Hi All,
Is there any way to convert a file which is in UNIX format to a PC format....
Flip command can be used , apart form this command can we have any other way.... like usinf "awk" etc ..... main purpose of not using flip is that my Kshell doesnot support this comamnd.... (1 Reply)
hi...... thanks for allowing me to start a discussion
i am collecting usb usage details of all users and convert it into csv files so that i can export it into some database..
the input text file is as follows:-
USB History Dump
by nabiy (c)2008
(1) --- Kingston DataTraveler 130 USB... (2 Replies)
Hi All,
I have a output like below values
val1=test.com
val2=10.26.208.11
val3=en1
val4=test-priv1.com
val5=192.168.3.4
val6=en2
val7=test-priv2.com
val8=192.168.4.4
val9=en3
val10=test-vip.com
val11=10.26.208.9
val12=$val3
I want to convet this output values into below... (1 Reply)
Hello,
I need some help to reformat this table-by-row to matrix?
infile:
site1 A:o,p,q,r,s,t
site1 C:y,u
site1 T:v,w
site1 -:x,z
site2 A:p,r,t,v,w,z
site2 C:u,y
site2 G:q,s
site2 -:o,x
site3 A:o,q,s,t,u,z
site3 C:y
site3 T:v,w,x
site3 -:p,routfile:
SITE o p q r s t v u w x y... (7 Replies)
Hello
I've four fields . They are First Name, Last Name, Age, Country. So when I run a Unix command, I get below output with these fields comes every time in different order as you can see. Some times first name is the first row and other time last name is first row in the output and etc etc..... (9 Replies)
Discussion started by: rprpr
9 Replies
LEARN ABOUT DEBIAN
bio::seqio::embldriver
Bio::SeqIO::embldriver(3pm) User Contributed Perl Documentation Bio::SeqIO::embldriver(3pm)NAME
Bio::SeqIO::embldriver - EMBL sequence input/output stream
SYNOPSIS
It is probably best not to use this object directly, but rather go through the SeqIO handler system. Go:
$stream = Bio::SeqIO->new(-file => $filename, -format => 'embldriver');
while ( (my $seq = $stream->next_seq()) ) {
# do something with $seq
}
DESCRIPTION
This object can transform Bio::Seq objects to and from EMBL flat file databases.
There is a lot of flexibility here about how to dump things which should be documented more fully.
There should be a common object that this and Genbank share (probably with Swissprot). Too much of the magic is identical.
Optional functions
_show_dna()
(output only) shows the dna or not
_post_sort()
(output only) provides a sorting func which is applied to the FTHelpers before printing
_id_generation_func()
This is function which is called as
print "ID ", $func($annseq), "
";
To generate the ID line. If it is not there, it generates a sensible ID line using a number of tools.
If you want to output annotations in EMBL format they need to be stored in a Bio::Annotation::Collection object which is accessible
through the Bio::SeqI interface method annotation().
The following are the names of the keys which are polled from a Bio::Annotation::Collection object.
reference - Should contain Bio::Annotation::Reference objects
comment - Should contain Bio::Annotation::Comment objects
dblink - Should contain Bio::Annotation::DBLink objects
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to one
of the Bioperl mailing lists. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
it. Please include a thorough description of the problem with code and data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug reports can be submitted via the
web:
https://redmine.open-bio.org/projects/bioperl/
AUTHOR - Ewan Birney
Email birney@ebi.ac.uk
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
next_seq
Title : next_seq
Usage : $seq = $stream->next_seq()
Function: returns the next sequence in the stream
Returns : Bio::Seq object
Args :
write_seq
Title : write_seq
Usage : $stream->write_seq($seq)
Function: writes the $seq object (must be seq) to the stream
Returns : 1 for success and 0 for error
Args : array of 1 to n Bio::SeqI objects
seqhandler
Title : seqhandler
Usage : $stream->seqhandler($handler)
Function: Get/Set teh Bio::Seq::HandlerBaseI object
Returns : Bio::Seq::HandlerBaseI
Args : Bio::Seq::HandlerBaseI
perl v5.14.2 2012-03-02 Bio::SeqIO::embldriver(3pm)