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Top Forums UNIX for Beginners Questions & Answers UNIX command to select the best edge values from a network file Post 303045056 by nezabudka on Wednesday 11th of March 2020 09:40:58 AM
Old 03-11-2020
Hi, @Sanchari
Check have you an error?
Quote:
Originally Posted by Sanchari
Test data
Code:
     Gene1    Gene2    Log
    AT1G01020    AT1G01010    1.682708
    AT1G01020    AT1G01010    -1.90043
    AT1G01020    AT1G01010    -1.832192
    AT1G01070    AT1G01060    -0.591932
    AT1G01070    AT1G01060    -1.204241
    AT1G01073    AT1G01070    0.790549
    AT1G01060    AT1G01070    1.214972

Expected Output

Code:
    AT1G01020    AT1G01010    -1.90043
    AT1G01070    AT1G01060    1.214972
    AT1G01073    AT1G01070    0.790549

If you need to display and unique fields
then the result should be
Code:
AT1G01070 AT1G01060 -1.204241
AT1G01060 AT1G01070 1.214972
AT1G01020 AT1G01010 -1.90043
AT1G01073 AT1G01070 0.790549

and if don't
Code:
AT1G01070 AT1G01060 -1.204241
AT1G01020 AT1G01010 -1.90043

Is the solution suitable for you with the 'awk' tool?

--- Post updated at 17:40 ---

Code:
uniq -Dw 26 file |
awk '
NR==1 {next}
{if(abs(A[$1 FS $2]) < abs($3)) A[$1 FS $2] = $3}
END {for(i in A) print i, A[i]}
func abs(x) { return (x<0) ? x*-1 : x }'

awk '
NR==1 {next}
{if(abs(A[$1 FS $2]) < abs($3)) A[$1 FS $2] = $3}
END {for(i in A) print i, A[i]}
func abs(x) { return (x<0) ? x*-1 : x }' file

 

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PYTHON-CONFIG(1)					      General Commands Manual						  PYTHON-CONFIG(1)

NAME
python-config - output build options for python C/C++ extensions or embedding SYNOPSIS
python-config [ --prefix ] [ --exec-prefix ] [ --includes ] [ --libs ] [ --cflags ] [ --ldflags ] [ --extension-suffix ] [ --configdir ] [ --help ] DESCRIPTION
python-config helps compiling and linking programs, which embed the Python interpreter, or extension modules that can be loaded dynamically (at run time) into the interpreter. OPTIONS
--cflags print the C compiler flags. --ldflags print the flags that should be passed to the linker. --includes similar to --cflags but only with -I options (path to python header files). --libs similar to --ldflags but only with -l options (used libraries). --prefix prints the prefix (base directory) under which python can be found. --exec-prefix print the prefix used for executable program directories (such as bin, sbin, etc). --extension-suffix print suffix used for extension modules (including the _d modified for debug builds). --configdir prints the path to the configuration directory under which the Makefile, etc. can be found). --help print the usage message. EXAMPLES
To build the singe-file c program prog against the python library, use gcc $(python-config --cflags --ldflags) progr.cpp -o progr.cpp The same in a makefile: CFLAGS+=$(shell python-config --cflags) LDFLAGS+=$(shell python-config --ldflags) all: progr To build a dynamically loadable python module, use gcc $(python-config --cflags --ldflags) -shared -fPIC progr.cpp -o progr.so SEE ALSO
python (1) http://docs.python.org/extending/extending.html /usr/share/doc/python/faq/extending.html AUTHORS
This manual page was written by Johann Felix Soden <johfel@gmx.de> for the Debian project (and may be used by others). November 27, 2011 PYTHON-CONFIG(1)
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