How i create a value by comparing the data from specific field and fetch particular character from other column.
For example i want to compare the 3rd field and fetch 4th character from last column, say if 3rd column have 'bcd' then fetech "i" and append the same "i" as last column if data doesn't match then do nothing. all columns separated by delimiter comma.
i want to split a big line based on the position.
example :
I have a single line which has 2300 characters.
i want to split from 1 character to 300th characters as first line
and 301th to 600 as second line and 601th to 900 as third line ...till the end of the string.
Can anyone help... (1 Reply)
Hi,
I have a file like below:
ABC,1001,DEFG,40000
AVD,2002,FGRG,3000
DBF,2002,HDGD,3454
GDF,4564,GRTR,5656
GDF,4659,GGTD,10002
....
.....
I have to get all the lines which contains 2002 and 4659 at the second position. Please help.
The output file will be like:
... (9 Replies)
Hi,
I have a file with data like below
a}hasksd09090}kdkdkd
aksdkdkdk787}08ksapodd
asl}alks13233}dsjskdkd
I need to replace any '}' to 0 if it appears in 10 to 15 postions.If } appears in any other postion I need to leave it.
So for the above data , output should be
a}hasksd090900kdkdkd... (1 Reply)
Dear Guyz:)
I have 2 different input files like this. I would like to pick the values or letters from the inputfile2 based on inputfile1 keys (A,F,N,X,Z).
I have done similar task by using awk but in that case the inputfiles are similar like in inputfile2 (all keys in 1st column and values in... (16 Replies)
Trying to use sed - but having no luck.
I have a text file - I want to replace whatever character is in position 106, 157 and 237 w/ the string "xxx". Want this change for all lines w/in that text file.
I'm open to using awk or whatever command would be best for replacing characters based... (5 Replies)
The file has record length 200. And i have 100 search strings which are ten digits of character from 1 to 10 characters all of them are unique, they need to searched in a file. Please help me to pull the records based on position (say from 1-10).
test data
1FAHP2DW0BG115206RASHEED ... (6 Replies)
Hey!
I'm new to C. I need to covert certain values using C. please see the below. I have figured out the logic to do it. Please provide some hints to do this with C
Logic:
If first position of POS = 0, shift POS to the left one byte.
If third position of POS = 0, move spaces to third... (1 Reply)
Hi All,
I need help for doing the following.
I have a input file like:
aaaaaaaaaabbbbbbbbbbbbbbbbbbbb
cccbbbbbaaaaaadddddaaaabbbbbbb
now I am trying to generate a output csv file where i will have for e.g.
0-3 chars of each line as the first column in the csv, 4-10 chars of the line as... (3 Replies)
Hello,
I need some sort of way to extract every date contained in a file, and count how many of those dates there are.
Here are the specifics:
The date format I'm looking for is mm/dd/yyyy
I only need to look after line 45 in the file (that's where the data begins)
The columns of... (2 Replies)
Hi,
I have a file with multiple lines(fixed width dat file). I want to search for '02' in the positions 45-46 and if available, in that lines, I need to replace value in position 359 with blank. As I am new to unix, I am not able to figure out how to do this. Can you please help me to achieve... (9 Replies)
Discussion started by: Pradhikshan
9 Replies
LEARN ABOUT DEBIAN
fastx_quality_stats
FASTX_QUALITY_STATS(1) User Commands FASTX_QUALITY_STATS(1)NAME
fastx_quality_stats - FASTX Statistics
DESCRIPTION
usage: fastx_quality_stats [-h] [-N] [-i INFILE] [-o OUTFILE] Part of FASTX Toolkit 0.0.13.2 by A. Gordon (gordon@cshl.edu)
[-h] = This helpful help screen. [-i INFILE] = FASTQ input file. default is STDIN. [-o OUTFILE] = TEXT output file. default is
STDOUT. [-N] = New output format (with more information per nucleotide/cycle).
The *OLD* output TEXT file will have the following fields (one row per column):
column = column number (1 to 36 for a 36-cycles read solexa file)
count = number of bases found in this column.
min = Lowest quality score value found in this column.
max = Highest quality score value found in this column.
sum = Sum of quality score values for this column.
mean = Mean quality score value for this column.
Q1 = 1st quartile quality score.
med = Median quality score.
Q3 = 3rd quartile quality score.
IQR = Inter-Quartile range (Q3-Q1).
lW = 'Left-Whisker' value (for boxplotting).
rW = 'Right-Whisker' value (for boxplotting).
A_Count = Count of 'A' nucleotides found in this column. C_Count = Count of 'C' nucleotides found in this column. G_Count = Count
of 'G' nucleotides found in this column. T_Count = Count of 'T' nucleotides found in this column. N_Count = Count of 'N' nucleo-
tides found in this column. max-count = max. number of bases (in all cycles)
The *NEW* output format:
cycle (previously called 'column') = cycle number max-count For each nucleotide in the cycle (ALL/A/C/G/T/N):
count = number of bases found in this column.
min = Lowest quality score value found in this column.
max = Highest quality score value found in this column.
sum = Sum of quality score values for this column.
mean = Mean quality score value for this column.
Q1 = 1st quartile quality score.
med = Median quality score.
Q3 = 3rd quartile quality score.
IQR = Inter-Quartile range (Q3-Q1).
lW = 'Left-Whisker' value (for boxplotting).
rW = 'Right-Whisker' value (for boxplotting).
SEE ALSO
The quality of this automatically generated manpage might be insufficient. It is suggested to visit
http://hannonlab.cshl.edu/fastx_toolkit/commandline.html
to get a better layout as well as an overview about connected FASTX tools.
fastx_quality_stats 0.0.13.2 May 2012 FASTX_QUALITY_STATS(1)