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UNIX for Beginners Questions & Answers
Split a file based on number sum at the second column and the third column.
Post 303044688 by Chubler_XL on Sunday 1st of March 2020 10:32:36 PM
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Hi,
I am new to this forum and new to awk.
I have a file that contains 2 columns.
Heres an example of what it looks like:
10 +
20 +
40 +
50 -
70 -
So the file is tab-delimited. What I want to do is add 10 to column 1 whenever column 2 is + and substract 10 from column 1... (1 Reply)
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ATOM 1 N GLY A 1 -3.198 27.537 -5.958 1.00 0.00 N
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Hi,
I have a file sample_1.txt (300k rows) which has data like below:
* Also each record is around 64k bytes
11|1|abc|102553|125589|64k bytes of data
10|2|def|123452|123356|......
13|2|geh|144351|121123|...
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MT,AP,CDM,TTSL,AP,GS,FAIL,9
MT,AP,CDM,RCom,MAH,GS,SUCC,3
MT,AP,CDM,RTL,HP,GS,SUCC,1
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Hi,
I have a similar input format-
A_1 2
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Hi,
I have a table to be imported for R as matrix or data.frame but I first need to edit it because I've got several lines with the same identifier (1st column), so I want to sum the each column (2nd -nth) of each identifier (1st column)
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please write a shell script
Table
--------------------------
1 2 3 a b c
3 4 5 c d e
7 8 9 f g h
Output should be like this
---------------
1 2 3
3 4 5
7 8 9
a b c
c d e
f g h (1 Reply)
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Split column data if the table has n number of column's with some record then how to split n number of colmn's line by line with records
Table
---------
Col1 col2 col3 col4 ....................col20
1 2 3 4 .................... 20
a b c d .................... v
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Hello,
I am trying to store sum of a column as a new column inside a file but have to find the column names dynamically
I/p
c1,c2,c3,c4,c5
10,20,30,40,50
20,30,40,50,60
If i want to find sum only column c1, c3 and output it as c6,c7
O/p
c1,c2,c3,c4,c5,c6,c7
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Hi All,
I have a file as below and want to sum based on the id in the first column
Input
10264;ATE; 12
10265;SES;11
10266AUT;50
10264;ATE;10
10265;SES;13
10266AUT;89
10264;ATE;1
10265;SES;15
10266AUT;78
Output
10264;ATE; 23
10265;SES;39
10266AUT;139 (6 Replies)
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LEARN ABOUT DEBIAN
fastx_quality_stats
FASTX_QUALITY_STATS(1) User Commands FASTX_QUALITY_STATS(1) NAME
fastx_quality_stats - FASTX Statistics DESCRIPTION
usage: fastx_quality_stats [-h] [-N] [-i INFILE] [-o OUTFILE] Part of FASTX Toolkit 0.0.13.2 by A. Gordon (gordon@cshl.edu) [-h] = This helpful help screen. [-i INFILE] = FASTQ input file. default is STDIN. [-o OUTFILE] = TEXT output file. default is STDOUT. [-N] = New output format (with more information per nucleotide/cycle). The *OLD* output TEXT file will have the following fields (one row per column): column = column number (1 to 36 for a 36-cycles read solexa file) count = number of bases found in this column. min = Lowest quality score value found in this column. max = Highest quality score value found in this column. sum = Sum of quality score values for this column. mean = Mean quality score value for this column. Q1 = 1st quartile quality score. med = Median quality score. Q3 = 3rd quartile quality score. IQR = Inter-Quartile range (Q3-Q1). lW = 'Left-Whisker' value (for boxplotting). rW = 'Right-Whisker' value (for boxplotting). A_Count = Count of 'A' nucleotides found in this column. C_Count = Count of 'C' nucleotides found in this column. G_Count = Count of 'G' nucleotides found in this column. T_Count = Count of 'T' nucleotides found in this column. N_Count = Count of 'N' nucleo- tides found in this column. max-count = max. number of bases (in all cycles) The *NEW* output format: cycle (previously called 'column') = cycle number max-count For each nucleotide in the cycle (ALL/A/C/G/T/N): count = number of bases found in this column. min = Lowest quality score value found in this column. max = Highest quality score value found in this column. sum = Sum of quality score values for this column. mean = Mean quality score value for this column. Q1 = 1st quartile quality score. med = Median quality score. Q3 = 3rd quartile quality score. IQR = Inter-Quartile range (Q3-Q1). lW = 'Left-Whisker' value (for boxplotting). rW = 'Right-Whisker' value (for boxplotting). SEE ALSO
The quality of this automatically generated manpage might be insufficient. It is suggested to visit http://hannonlab.cshl.edu/fastx_toolkit/commandline.html to get a better layout as well as an overview about connected FASTX tools. fastx_quality_stats 0.0.13.2 May 2012 FASTX_QUALITY_STATS(1)