using awk
iam trying to get the title moved up to the line above
the title is between the first and last dashs
some titles have more dashs than others
also need the video size between the 9th forward slash moved up as well
i have this
required output
i have tried this but because the amount of dashs some more some less it will only do part of the last one
I have a text file that has blocks of text. Each block starts with ### and ends with End_###.
I wrote a perl script to search a string from line 2 (ignore any line starts with ###) of each block
if matched, need to print that whole block. According to the input file in below, it will print... (5 Replies)
I have a script with this statement:
/usr/xpg4/bin/awk -F"" 'NR==FNR{s=$2;next}{printf "%s\"%s\"\n", $0, s}' LOOKUP.TXT finallistnew.txt >test.txt
I want to include logic or an additional step that says if there is no data in field 3, move the whole line out of test.txt into an additional... (9 Replies)
I have the following text format in a file which lists the question first and then 5 choices
after that the explanantion and finally the answer.
1.The amount of time it takes for most of a worker’s occupational knowledge and skills to become
obsolete has been declining because of the... (2 Replies)
Can somebody help me with this? I'm sure it's a no-brainer if you know awk... but I don't.
Input:
Blah
Blah
Me love you
long time
Blah
Blah
awk magic with 'long time'
==>
Output:
Blah
Blah
Me love you long time (0 Replies)
This is appending a column.
My question is fairly simple. I have a program generating data in a form like so:
1 20
2 22
3 23
4 12
5 43
For ever iteration I'm generating this data. I have the basic idea with cut -f 2 fileA.txt | paste -d >> FileB.txt ???? I want FileB.txt to grow, and... (4 Replies)
I want to add/append the info in the following format to my.txt file.
20130702|abcd20130702.txt FN|SN|DOB
I tried the below script but it throws me some exceptions.
<#!/bin/sh
dt = date '+%y%m%d'members;
echo $dt+|+members+$dt;
/usr/bin/awk -f
BEGIN { FS="|"; OFS="|"; } { print... (6 Replies)
Dear all,
I have a huge txt file (DATA.txt) with the following content . From this txt file, I want the following output using some shell script.
Any help is greatly appreciated.
Greetings,
emily
DATA.txt (snippet of the huge text file)
407202849... (2 Replies)
Hi All
Is there a way to export every line into new txt file where by the title of each txt output are same as the line ?
I have this txt files containing names:
Kandra Vanhooser
Rhona Menefee
Reynaldo Hutt
Houston Rafferty
Charmaine Lord
Albertine Poucher
Juana Maes
Mitch Lobel... (2 Replies)
i would like to insert a line from 2.txt into 1.txt between " and "
or a way of adding to the end of each line " _01_ and have the numbers
correspond to the line #
1.txt=
foofoo "" _01_
foofoo "" _02_
foofoo "" _03_
foofoo "" _04_
2.txt= ... (6 Replies)
Hi dears
i have text file like this:
INPUT.txt
001_1_173 j nuh ]az
001_1_174 j ]esma. nuh ]/.xori
.
.
. and have another text
like this
TABLE.txt
j j
nuh word1... (6 Replies)
Discussion started by: alii
6 Replies
LEARN ABOUT DEBIAN
bio::index::fastq
Bio::Index::Fastq(3pm) User Contributed Perl Documentation Bio::Index::Fastq(3pm)NAME
Bio::Index::Fastq - Interface for indexing (multiple) fastq files
SYNOPSIS
# Complete code for making an index for several
# fastq files
use Bio::Index::Fastq;
use strict;
my $Index_File_Name = shift;
my $inx = Bio::Index::Fastq->new(
'-filename' => $Index_File_Name,
'-write_flag' => 1);
$inx->make_index(@ARGV);
# Print out several sequences present in the index
# in Fastq format
use Bio::Index::Fastq;
use strict;
my $Index_File_Name = shift;
my $inx = Bio::Index::Fastq->new('-filename' => $Index_File_Name);
my $out = Bio::SeqIO->new('-format' => 'Fastq','-fh' => *STDOUT);
foreach my $id (@ARGV) {
my $seq = $inx->fetch($id); # Returns Bio::Seq::Quality object
$out->write_seq($seq);
}
# or, alternatively
my $id;
my $seq = $inx->get_Seq_by_id($id); #identical to fetch
DESCRIPTION
Inherits functions for managing dbm files from Bio::Index::Abstract.pm, and provides the basic funtionallity for indexing fastq files, and
retrieving the sequence from them. Note: for best results 'use strict'.
Bio::Index::Fastq supports the Bio::DB::BioSeqI interface, meaning it can be used as a Sequence database for other parts of bioperl
FEED_BACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to one
of the Bioperl mailing lists. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
it. Please include a thorough description of the problem with code and data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug reports can be submitted via the
web:
https://redmine.open-bio.org/projects/bioperl/
AUTHOR - Tony Cox
Email - avc@sanger.ac.uk
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
_file_format
Title : _file_format
Function: The file format for this package, which is needed
by the SeqIO system when reading the sequence.
Returns : 'Fastq'
_index_file
Title : _index_file
Usage : $index->_index_file( $file_name, $i )
Function: Specialist function to index FASTQ format files.
Is provided with a filename and an integer
by make_index in its SUPER class.
Example :
Returns :
Args :
id_parser
Title : id_parser
Usage : $index->id_parser( CODE )
Function: Stores or returns the code used by record_id to
parse the ID for record from a string. Useful
for (for instance) specifying a different
parser for different flavours of FASTQ file.
Returns &default_id_parser (see below) if not
set. If you supply your own id_parser
subroutine, then it should expect a fastq
description line. An entry will be added to
the index for each string in the list returned.
Example : $index->id_parser( &my_id_parser )
Returns : ref to CODE if called without arguments
Args : CODE
default_id_parser
Title : default_id_parser
Usage : $id = default_id_parser( $header )
Function: The default Fastq ID parser for Fastq.pm
Returns $1 from applying the regexp /^>s*(S+)/
to $header.
Returns : ID string
Args : a fastq header line string
perl v5.14.2 2012-03-02 Bio::Index::Fastq(3pm)