Hi guys,
Couldn't find the solution of this problem. Please Help!
I have a file-
Input_File
TC200232 92 30
TC215306 2 74
TC210135 42 14
I want an output file in which if column2>column3, the values are swapped and an additional column with value Rev_Com is... (4 Replies)
Hello everybody,
I have a text file containing 10,000 rows and 5000 columns. The values are separated by a tab.
Ex.
file_ex.ped
1 mike 0 0 2 1 A A G G C T A G
1 jack 0 0 2 2 T A G T C A A C
1 Mary 0 0 1 2 A T G C A T G C
...
I would like a out put file
1 mike 0 0 2 1 AA GG CT AG
1... (7 Replies)
Hello everybody,
I have some large files containing statistical data. The data is stored in the following generic format:
>cat my_file
1, 2, 3
1, 2, 3
1, 2, 3
>
The values of columns no.2 and 3 are expressed in bytes. I would like to transform them in Megabytes, by dividing them with... (3 Replies)
Hi All,
I have two sets of files.
Set 1: 100 text files with extension .txt with names like 1.txt, 2.txt, 3.txt until 100.txt
Set 2: One big file with extension .dat
The text files have some records in columns like this:
0.7316431 82628
0.7248189 82577
0.7248182 81369
0.7222999... (1 Reply)
I have a text file that has three columns. But at the end of the text file, there are trailing lines that have missing second and third columns:
4 0.04972604 KLHL28
4 0.0497332 CSTB
4 0.04979822 AIF1
4 0.04983331 DECR2
4 0.04990344 KATNB1
4
4
4
4
How can I remove the trailing... (3 Replies)
Hi,
I have a file as listed below.. What I want to get is for each unique value in column 1 the corresponding values in the rest of the columns should be summed up..
AAK1 0 1 0 11
AAK1 0 0 1 1
AAK1 0 0 1 2... (2 Replies)
Hi All,
I have a pipe seperated file. I need to add the values in second and third columns with group by on first column.
MYFILE_28012012_1115|47|173.90
MYFILE_28012012_1115|4|0.00
MYFILE_28012012_1115|6|22.20
MYFILE_28012012_1116|47|173.90
MYFILE_28012012_1116|4|0.00... (3 Replies)
Hi All,
I have a file with thousands of lines in the following format, where
Field1=First 8 characters
Field2-9-16 characters
Field3=17-26 characters
I need to add Field 1 and Field2 and subtract the result from Field 3.
Field3=Field3 - (Field1 + Field2)
0012.00 0010.00 0001576.53... (4 Replies)
I'm trying to learn awk, but I've hit a roadblock with this problem. I have a hierarchy stored in a file with 3 columns:
id name parentID
4 D 2
2 B 1
3 C 1
1 A 5
I need to check if there are any values in column 3 that are not represented anywhere in column 1. I've tried this:
awk '{arr;}... (7 Replies)
Discussion started by: kaktus
7 Replies
LEARN ABOUT DEBIAN
getcol
getcol(1) General Commands Manual getcol(1)Name
getcol - Extract specified columns from an ASCII table file
Synopsis
getcol [-amv][-n num][-r lines][-s num] filename [column number range]
Description
Extract specified columns from an ASCII table file
Options
filename
Name of a ASCII table file. At least one of these must be present for any values to be printed. If it is stdin or STDIN, an ASCII
table is expected as standard input. If there is no input file, standard input is assumed.
@filename
Name of a file containing a list of ASCII table files. If this is present, any other file names on the command line will be
ignored.
field range
Print value of these columns for the number of lines of the table specified by the -n argument after the skippiing the number of
lines specified by the -s argument. A value of 0 causes the entire input line to be printed.
-a Sum all numeric columns selected, printing the sum on the line following the result. Columns with no sum are filled with ___.
(Added in version 2.6.9)
-b Input is bar-separate table file
-c Add count of number of lines in each column at end
-d <number>
Number of decimal places in f.p. output
-e Compute medians of selected columns
-f Print range of values in selected columns
-h Print Starbase tab table header
-i Input is tab-separate table file
-k Print number of columns on first line
-l <number>
Number of lines to add to each line
-m Compute the means of all numeric columns selected, printing the mean on the line following the result (or the line following the sum
if -a is used). Columns with no mean are filled with ___. (Added in version 2.6.9)
-n num Print selected columns for this many lines. If not specified, all lines will be read after the number of lines specified by -s have
been skipped.
-o OR conditions insted of ANDing them
-p Print only sum, mmean, sigma, median, or range, not entries
-r @listfile
-r line range Print columns from the lines specified as either the first nonzero number on each line of the file listfile or the
comma- and hyphen- delimitied range; i.e. 1-5,10-12 will print values from lines 1, 2, 3, 4, 5, 10, 11, and 12. (added in version
2.6.12)
-s num Skip this many line before starting to print values. If not specified, no lines will be skipped.
-t Starbase (tab-separated) table output
-v Print more information about process.
Web Page
http://tdc-www.harvard.edu/software/wcstools/getcol.html
Author
Doug Mink, SAO (dmink@cfa.harvard.edu)
8 November 2001 WCSTools getcol(1)