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Top Forums Programming How to make use others' C library installed not for the system-wide (Ubuntu/Linux)? Post 303042977 by Neo on Wednesday 15th of January 2020 12:04:38 AM
Old 01-15-2020
First, I suggest when troubleshooting, you should:

Use the full path name to file, not relative path name. This will insure there are no strange, unseen PATH issues. For example:

Code:
gcc -Wall -O3 -I ./htslib-1.10.2/htslib  -o vcf_parser01 vcf.c  vcf_parser01.c

I would change this to:

Code:
gcc -Wall -O3 -I /FULL/PATH/TO/HERE/htslib-1.10.2/htslib  -o vcf_parser01 vcf.c  vcf_parser01.c

Second, you should confirm that these objects are in the PATH, exactly, and that you have read / access permission for them.

Sometimes, even the best sys admins install code under one userid, then they work as another userid, and they do not have permissions to access the file. Happens all the time (at least to me, LOL).

This is generally the first two steps I always take (back to basics, before back to the future).
  • Insure your PATH(s) are correct and objects / symbols are in the PATH(s), correctly.
  • Check file and directly permissions for the userid you are using to build.

UNIX and Linux are funny things, they generally do what they are told to do and report back the "facts" as they find them. In your case, gcc cannot find required symbols and objects. This is generally because they cannot find them, i.e. not in the search PATH or the file/directory permissions are "not as required".

Please post back and let me know if you are certain your PATHs are correct and why, using the FULL PATH names to files and directories in your command line for gcc.

Since we are not "standing behind you, watching you type", we cannot "see" what directory you are in, so to be sure, it is always best to use FULL PATH names when troubleshooting a problem like this.

Thanks.
This User Gave Thanks to Neo For This Post:
 

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ubuntu-dev-tools(5)						File Formats Manual					       ubuntu-dev-tools(5)

NAME
ubuntu-dev-tools - Configuration for the ubuntu-dev-tools package. DESCRIPTION
The ubuntu-dev-tools package is similar in scope to the devscripts(1) package, providing a collection of scripts which may be of use to Ubuntu and Debian developers or others wishing to build Debian packages. Some of these scripts have options which may be configured on a system-wide and per-user basis. These options are configured in devscripts.conf(5). All variables are described in the script's manpages. Package-wide variables begin with "UBUNTUTOOLS" and are listed below. Every script which reads the configuration files can be forced to ignore them by using the --no-conf command-line option. ENVIRONMENT
All ubuntu-dev-tools configuration variables can be set (and overridden) by setting them in the environment (unlike devscripts). In addition, several scripts use the following environment variables: UBUMAIL Overrides DEBEMAIL and DEBFULLNAME when the target is clearly Ubuntu. Can either contain an e-mail address or Full Name <email@example.org>. DEBEMAIL, DEBFULLNAME As in devscripts(1). PACKAGE-WIDE VARIABLES The currently recognised package-wide variables are: UBUNTUTOOLS_BUILDER This specifies the preferred test-builder, one of pbuilder (default), sbuild, pbuilder-dist. UBUNTUTOOLS_DEBIAN_MIRROR The preferred Debian archive mirror. Should be of the form http://ftp.debian.org/debian (no trailing slash). If not specified, the master will be used. UBUNTUTOOLS_DEBSEC_MIRROR The preferred Debian security archive mirror. Should be of the form http://security.debian.org (no trailing slash). If not speci- fied, the master will be used. UBUNTUTOOLS_UBUNTU_MIRROR The preferred Ubuntu archive mirror. Should be of the form http://archive.ubuntu.com/ubuntu (no trailing slash). If not specified, the master will be used. UBUNTUTOOLS_UBUNTU_PORTS_MIRROR The preferred Ubuntu archive mirror. Should be of the form http://ports.ubuntu.com (no trailing slash). If not specified, the mas- ter will be used. UBUNTUTOOLS_LPINSTANCE The launchpad instance to communicate with. e.g. production (default) or staging. UBUNTUTOOLS_MIRROR_FALLBACK Whether or not to fall-back to the master archive mirror. This is usually the desired behaviour, as mirrors can lag the masters. If on a private network with only a local mirror, you may want to set this to no. One of yes (default) or no. UBUNTUTOOLS_UPDATE_BUILDER Whether or not to update the test-builder before each test build. One of yes or no (default). UBUNTUTOOLS_WORKDIR The directory to use for preparing source packages etc. When unset, defaults to a directory in /tmp/ named after the script. SEE ALSO
devscripts(1), devscripts.conf(5) AUTHORS
This manpage was written by Stefano Rivera <stefanor@ubuntu.com>. ubuntu-dev-tools December 19 2010 ubuntu-dev-tools(5)
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