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Top Forums Programming How to make use others' C library installed not for the system-wide (Ubuntu/Linux)? Post 303042977 by Neo on Wednesday 15th of January 2020 12:04:38 AM
Old 01-15-2020
First, I suggest when troubleshooting, you should:

Use the full path name to file, not relative path name. This will insure there are no strange, unseen PATH issues. For example:

Code:
gcc -Wall -O3 -I ./htslib-1.10.2/htslib  -o vcf_parser01 vcf.c  vcf_parser01.c

I would change this to:

Code:
gcc -Wall -O3 -I /FULL/PATH/TO/HERE/htslib-1.10.2/htslib  -o vcf_parser01 vcf.c  vcf_parser01.c

Second, you should confirm that these objects are in the PATH, exactly, and that you have read / access permission for them.

Sometimes, even the best sys admins install code under one userid, then they work as another userid, and they do not have permissions to access the file. Happens all the time (at least to me, LOL).

This is generally the first two steps I always take (back to basics, before back to the future).
  • Insure your PATH(s) are correct and objects / symbols are in the PATH(s), correctly.
  • Check file and directly permissions for the userid you are using to build.

UNIX and Linux are funny things, they generally do what they are told to do and report back the "facts" as they find them. In your case, gcc cannot find required symbols and objects. This is generally because they cannot find them, i.e. not in the search PATH or the file/directory permissions are "not as required".

Please post back and let me know if you are certain your PATHs are correct and why, using the FULL PATH names to files and directories in your command line for gcc.

Since we are not "standing behind you, watching you type", we cannot "see" what directory you are in, so to be sure, it is always best to use FULL PATH names when troubleshooting a problem like this.

Thanks.
This User Gave Thanks to Neo For This Post:
 

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FTWHICH(1)						      General Commands Manual							FTWHICH(1)

NAME
ftwhich - fault tolerant search for a command name SYNOPSIS
ftwhich [-#hIp][-t#] program_name DESCRIPTION
ftwhich is a fault tolerant version of the which(1) command. ftwhich searches for a given program in all directories included in your PATH environment variable and reports all files with a name that approximately matches the given program_name. ftwhich achieves fault tolerance by calculating the so called Weighted Levenshtein Distance. The Levenshtein Distance is defined as the minimum number of character insertions, deletions and replacements that transform a string A into a string B. ftwhich is similar to the which command with the following differences: - ftwhich is by default NOT case sensitive - ftwhich is fault tolerant - Some shells have a build in which command that will also search aliases. ftwhich can naturally not search for aliases as it does not know about alias definitions. - ftwhich lists all files that approximately match. The files first shown take preference over files of the same name printed later as they are from directories listed earlier in the PATH. - The level of fault tolerance can be adjusted by specifying the optional parameter tolerance. A tolerance of 0 specifies exact match. OPTIONS
-h Prints help/usage information. -I Do case sensitive search (default is case in-sensitive) -p print the actual distance value in front of the found filename. This value is equal to the number of insertions, deletions and replacements necessary to transform the name of the found program into the search key. -# or -t# Set the fault tolerance level to #. The fault tolerance level is an integer in the range 0-255. It specifies the maximum number of errors permitted in finding the approximate match. The default tolerance is (strlen(searchpattern) - number of wildcards)/6 + 1 program_name The program file to search for. '*' and '?' can be used as wildcards. '?' denotes one single character. '*' denotes an arbitrary number of characters. The last argument to ftwhich is not parsed for options as the program needs at least one program_name argument. This means that ftwhich -x will not complain about a wrong option but search for the program named -x. EXAMPLE
Search for all programs like gcc in your PATH: ftwhich gcc This will e.g. find gcc or cc or CC ... To find all files that start with any prefix and end in config and differ in 2 letters from the word config: ftwhich -2 '*config' To find all files that exactly start with the prefix if: ftwhich -0 'if*' To find all clock programs: ftwhich -0 '*clock*' BUGS
The wildcards '?' and '*' can not be escaped. These characters function always as wildcards. This is however not a big problem since there is normally hardly any command that has these characters in its name. AUTHOR
Guido Socher (guido@linuxfocus.org) SEE ALSO
whichman(1), ftff(1) Search utilities January 1999 FTWHICH(1)
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