This is what I get on stdout after eliminating duplicates in your iplist, and empty lines in your data:
In how far doesn't that meet your expactations?
This output is how i want but do you see the output that i get. It has serial number printed matching the number of ips i.e
before the needed data on each of the lines. Please see my output from the previous post.
So, I will be working with someone and basically we are trying to build a form that is submitted most likely via the web and the data is just a string of numbers.
like:
19383882872201110929282821818182827349190102837364718191001932873711
Now, each number is part of a numerical value of... (4 Replies)
Hello,
I have a big data file (160 MB) full of records with pipe(|) delimited those fields. I`m sorting the file on the first field.
I'm trying to sort with "sort" command and it brings me 6 minutes.
I have tried with some transformation methods in perl but it results "Out of memory". I was... (2 Replies)
Hi,
So I'm kinda new to shell scripts and the like. I've picked up quite a bit of use from browsing the forums here but ran into a new one that I can't seem to find an answer for.
I'm looking to parse/find a string AND the next 15 or so charachters that follow the string within a text file... (1 Reply)
It is for HP-Unix B.11.31.
Requirement:
1. List the directories, which directories name has given particular string.
Example: Directories with name "Build"
2. On the output of 1. list the directories by creation date as sort order.
I tried with; find . -type d -name "Build*"
... (3 Replies)
Hi,
I am confused how to proceed firther please find the problem below:
Input Files:
DCIA_GEOG_DATA_OCEAN.TXT
DCIA_GEOG_DATA_MCRO.TXT
DCIA_GEOG_DATA_CVAS.TXT
DCIA_GEOG_DATA_MCR.TXT
Output File Name: MMA_RFC_GEOG_NAM_DIM_LOD.txt
Sample Record(DCIA_GEOG_DATA_OCEAN.TXT):(Layout same for... (4 Replies)
Hi Experts,
I have a filelist collected from another server , now want to sort the output using date/time stamp filed.
- Filed 6, 7,8 are showing the date/time/stamp.
Here is the input:
#----------------------------------------------------------------------
-rw------- 1 root ... (3 Replies)
Hello all,
How do I achieve this? I have A, B and A/B in different variables in a file in col2.
I want them to sort in such a way, that the variables appear together, and within a variable, the data is sorted in the order A,B and then A/B. If I sort on the second column, the order becomes A,... (6 Replies)
Hello,
I'm trying to sort a large data file by the 3rd column so that all of the first words in the 3rd column that are in all uppercase appear before (or after) the non uppercase words. For example,
Data file:
xxx 12345 Rat in the house
xxx 12345 CAT in the hat
xxx 12345 Dog in the... (4 Replies)
Hi,
I am using SUN SOLARIS (SunOS sun4v sparc SUNW, T5240).
I have a huge data file with header and trailer. This file gets used into an ETL process. ETL skips the header record (which is the first record of the file) and loads the rest of the record. The file can be delimited (comma,... (5 Replies)
PROFTMB(1) User Commands PROFTMB(1)NAME
proftmb - per-residue prediction of bacterial transmembrane beta barrels
SYNOPSIS
proftmb [options]
DESCRIPTION
proftmb predicts bacterial transmembrane beta barrels from sequence using profile fed Hidden Markov Models (HMM).
Output format
Self-annotating. Letters of prediction: 'i' - inside cytoplasm, 'O' - outside cytoplasm, 'U' - up (on chain moving out of cytoplasm), 'D'
- down (on chain moving into cytoplasm).
References
Bigelow, H. and Rost, B. (2006). PROFtmb: a web server for predicting bacterial transmembrane beta barrel proteins. Nucleic Acids Res,
34(Web Server issue), W186-8.
To invoke the menu, type:
proftmb --menu
The options are:
-d, --directory-root <STRING>
root path where files (options -s,-r,-l,-a,-e,-t,-u,-z,-n) reside
-a, --reduction-state-decode <STRING>
state reduction for decoding
-b, --reduction-state-report <STRING>
state reduction for reporting
-m, --membrane-strand-states <STRING>
list of membrane strand states
-z, --z-curve-file
<STRING> file containing means and sd's at integral length values
-x, --z-calibration-curve <STRING>
file mapping coverage and accuracy values to z-scores
-n, --null-frequency <STRING>
background frequency file
-c, --minimum-score-cutoff <DOUBLE>
minimum z-score for per-residue prediction
-o, --outfile-prefix <STRING>
output file prefix for the three files generated: PREFIX_dat.txt, PREFIX_proftmb_pretty.txt PREFIX_proftmb_tabular.txt
-s, --static-model-data <STRING>
data representing the model architecture
-t, --trained-params <STRING>
params representing the encoded training data
-q, --test-blastQ-file-or-dir <STRING>
psiblast profile (-Q) or directory (full pathname or relative to current directory) with many profiles
-w, --single-sequence-name <STRING>
if -q option points to a single file, this is the name
-v, --list-blastQ-files <STRING>
list of psiblast files to process in directory (leave blank to process all files)
--outfile-pretty <STRING>
pretty output file (overrides automatic name PREFIX_proftmb_pretty.txt)
--outfile-tab
<STRING> tabulated output file (overrides automatic name PREFIX_proftmb_tabular.txt)
--outfile-dat
<STRING> data output file (overrides automatic name PREFIX_dat.txt)
--version
<BOOL> output version information and exit
--quiet
<BOOL> be quiet
EXAMPLES
proftmb @/usr/share/proftmb/options -q /usr/share/doc/proftmb/examples/example.Q -o /tmp/example
The above produces 3 output files: /tmp/example_proftmb_tabular.txt, /tmp/example_proftmb_pretty.txt and /tmp/example_dat.txt. Compare
these to the examples in /usr/share/doc/proftmb/examples.
BUGS
Please report bugs at <https://rostlab.org/bugzilla3/enter_bug.cgi?product=proftmb>.
COPYRIGHT
Copyright (C) 2004 Henry Bigelow
This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
This package is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MER-
CHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.
You should have received a copy of the GNU General Public License along with this program. If not, see <http://www.gnu.org/licenses/>.
proftmb 1.1.10 February 2012 PROFTMB(1)