Sponsored Content
Top Forums UNIX for Beginners Questions & Answers Merge 4 bim files by keeping only the overlapping variants (unique rs values ) Post 303042790 by nezabudka on Tuesday 7th of January 2020 05:29:44 AM
Old 01-07-2020
Ok
Then this is what the doctor ordered. The command from the post #3 will filter duplicate values for 2 field.
If you need to select by the unique value of the entire line then so
Code:
awk '!T[$0]++' x201[4678] > ONE_FILE

 

10 More Discussions You Might Find Interesting

1. UNIX for Dummies Questions & Answers

Need to find only unique values for a given tag across the files

Need to find only unique values for a given tag across the files: For eg: Test1: <Tag1>aaa</Tag1> <Tag2>bbb</Tag2> <Tag3>ccc</Tag3> Test2: <Tag1>aaa</Tag1> <Tag2>ddd</Tag2> <Tag3>eee</Tag3> Test3: <Tag1>aaa</Tag1> <Tag2>ddd</Tag2> <Tag3>eee</Tag3> Test4: (8 Replies)
Discussion started by: sudheshnaiyer
8 Replies

2. Shell Programming and Scripting

comparing 2 text files to get unique values??

Hi all, I have got a problem while comparing 2 text files and the result should contains the unique values(Non repeatable). For eg: file1.txt 1 2 3 4 file2.txt 2 3 So after comaping the above 2 files I should get only 1 and 4 as the output. Pls help me out. (7 Replies)
Discussion started by: smarty86
7 Replies

3. Shell Programming and Scripting

merge files with same row values

Hi everyone, I'm just wondering how could I using awk language merge two files by comparison of one their row. I mean, I have one file like this: file#1: 21/07/2009 11:45:00 100.0000000 27.2727280 21/07/2009 11:50:00 75.9856644 25.2492676 21/07/2009 11:55:00 51.9713287 23.2258072... (4 Replies)
Discussion started by: tonet
4 Replies

4. Shell Programming and Scripting

sort split merge -u unique

Hi, this is about sorting a very large file (like 10 gb) to keep lines with unique entries across SOME of the columns. The line originally looked like this: sort -u -k2,2 -k3,3n -k4,4n -k5,5n -k6,6n file_unsorted > file_sorted please note the -u flag. The problem is that this single... (4 Replies)
Discussion started by: jbr950
4 Replies

5. UNIX for Dummies Questions & Answers

How to count specific columns and merge with unique ones?

Hi. I am not sure the title gives an optimal description of what I want to do. I have several text files that contain data in many columns. All the files are organized the same way, but the data in the columns might differ. I want to count the number of times data occur in specific columns,... (0 Replies)
Discussion started by: JamesT
0 Replies

6. UNIX for Dummies Questions & Answers

Merge two files with non-overlapping identities

Hi All, I wish to merge two files: file1: with header rsSNP-ID Chromosome Chr-Pos rs171 1 175261679 rs242 1 20869461 rs538 1 6160958 file2: without header disease:AAT deficiency:M0525101 rs1243168 20109307 1 disease:AAT deficiency:M0525101 rs4900229 20109307 1... (3 Replies)
Discussion started by: luoruicd
3 Replies

7. Shell Programming and Scripting

Compare multiple files, identify common records and combine unique values into one file

Good morning all, I have a problem that is one step beyond a standard awk compare. I would like to compare three files which have several thousand records against a fourth file. All of them have a value in each row that is identical, and one value in each of those rows which may be duplicated... (1 Reply)
Discussion started by: nashton
1 Replies

8. Shell Programming and Scripting

Identify the overlapping and non overlapping regions

file1 chr pos1 pos2 pos3 pos4 1)chr1 1000 2000 3000 4000 2)chr1 1380 1480 6800 7800 3)chr1 6700 7700 1200 2200 4)chr2 8500 9500 5670 6670 file2 chr pos1 pos2 pos3 pos4 1)chr2 8500 9500 5000 6000 2)chr1 6700 7700 1200 2200 3)chr1 1380 1480 6700 7700 4)chr1 1000 2000 4900 5900 I... (2 Replies)
Discussion started by: data_miner
2 Replies

9. Shell Programming and Scripting

Count Unique values from multiple lists of files

Looking for a little help here. I have 1000's of text files within a multiple folders. YYYY/ /MM /1000's Files Eg. 2014/01/1000 files 2014/02/1237 files 2014/03/1400 files There are folders for each year and each month, and within each monthly folder there are... (4 Replies)
Discussion started by: whegra
4 Replies

10. Shell Programming and Scripting

How to merge two files with unique values matching.?

I have one script as below: #!/bin/ksh Outputfile1="/home/OutputFile1.xls" Outputfile2="/home/OutputFile2.xls" InputFile1="/home/InputFile1.sql" InputFile2="/home/InputFile2.sql" echo "Select hobby, class, subject, sports, rollNumber from Student_Table" >> InputFile1 echo "Select rollNumber... (3 Replies)
Discussion started by: Sharma331
3 Replies
INTLTOOL-MERGE(8)					      System Manager's Manual						 INTLTOOL-MERGE(8)

NAME
intltool-merge - merge translated strings into various types of file SYNOPSIS
intltool-merge [option]... PO_DIRECTORY FILENAME OUTPUT_FILE DESCRIPTION
Merge translated strings in po files in PO_DIRECTORY with the original application file FILENAME, and output the file OUTPUT_FILE contain- ing both original and localized strings. If FILENAME is an XML file, OUTPUT_FILE will contain repeated xml nodes, where each node contains one of the localized strings with "xml:lang" attribute. OPTIONS
Mode of operation -b --ba-style Merge files in bonobo-activation style, which is used for bonobo servers. -d --desktop-style Merge files in desktop style, which is similar to the Windows .ini file format. -k --keys-style Merge files in keys style, which is used for metadata. -o --oaf-style (OBSOLETE) Same as -b/--ba-style. -r --rfc822deb-style Merge files in RFC 822 style, which is usually used in Debian configuration files. --quoted-style Merge files in quoted string style, which just translates any strings within "". -x --xml-style Merge files in standard XML style, both as attributes and as raw pcdata. Other options -u --utf8 Convert all strings to UTF-8 before merging. -p --pass-through Use strings as is in .po files without conversion (STRONGLY unrecommended with -x). -c --cache (TBD) -q --quiet Be quiet while running. -v --version Show version information. -h --help Show usage and basic help information. FILES
po/.intltool-merge-cache Cache file generated by intltool-merge, that contains all strings in all po files separated by 1. REPORTING BUGS
Report bugs to http://bugs.launchpad.net/intltool AUTHOR
Darin Adler <darin@bentspoon.com> Kenneth Christiansen <kenneth@gnu.org> Maciej Stachowiak <mjs@eazel.com> SEE ALSO
iconv(1), intltoolize(8), intltool-prepare(8), intltool-extract(8), intltool-update(8) intltool 2003-08-02 INTLTOOL-MERGE(8)
All times are GMT -4. The time now is 07:08 AM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy