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Top Forums UNIX for Beginners Questions & Answers Cannot subset ranges from another range set Post 303042678 by cryptodice on Friday 3rd of January 2020 07:38:23 AM
Old 01-03-2020
Thank you so much for your solution. But I used the following code:
Code:
awk '
  NR==FNR {                                                    # When reading the file for the first time
    R[$2 FS $3]                                                # Store the ranges $2 to $3 in array R, using the standard field separator
    next
  }
  {                                                            # When reading the file for the second time
    for(i in R) {                                              # For every line, for every range
      split(i,F)                                               # Split the stored range in minimum and maximum using the standard field separator
      if(F[1]<=$5 && $5<=F[2])                                 # F[1] will contain the minimum, F[2] the maximum, so if $5 , $6 are inside it.
        print $0, "range " $5 "-" $6 " inside " F[1] "-" F[2]  # print the result
    }
  }
' h1.txt h1.txt

But it is returning me the following, NOT what you wrote above:
Code:
inside 5286-50509s_SC5314      618550  627903  Ca21chr2_C_albicans_SC5314      7510    8043


Last edited by Scrutinizer; 01-03-2020 at 04:19 PM.. Reason: quote tags -> code tags
 

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JOIN(1) 						      General Commands Manual							   JOIN(1)

NAME
join - relational database operator SYNOPSIS
join [ options ] file1 file2 DESCRIPTION
Join forms, on the standard output, a join of the two relations specified by the lines of file1 and file2. If one of the file names is the standard input is used. File1 and file2 must be sorted in increasing ASCII collating sequence on the fields on which they are to be joined, normally the first in each line. There is one line in the output for each pair of lines in file1 and file2 that have identical join fields. The output line normally con- sists of the common field, then the rest of the line from file1, then the rest of the line from file2. Input fields are normally separated spaces or tabs; output fields by space. In this case, multiple separators count as one, and leading separators are discarded. The following options are recognized, with POSIX syntax. -a n In addition to the normal output, produce a line for each unpairable line in file n, where n is 1 or 2. -v n Like -a, omitting output for paired lines. -e s Replace empty output fields by string s. -1 m -2 m Join on the mth field of file1 or file2. -jn m Archaic equivalent for -n m. -ofields Each output line comprises the designated fields. The comma-separated field designators are either 0, meaning the join field, or have the form n.m, where n is a file number and m is a field number. Archaic usage allows separate arguments for field designators. -tc Use character c as the only separator (tab character) on input and output. Every appearance of c in a line is significant. EXAMPLES
sort /etc/passwd | join -t: -1 1 -a 1 -e "" - bdays Add birthdays to the /etc/passwd file, leaving unknown birthdays empty. The layout of /adm/users is given in passwd(5); bdays con- tains sorted lines like tr : ' ' </etc/passwd | sort -k 3 3 >temp join -1 3 -2 3 -o 1.1,2.1 temp temp | awk '$1 < $2' Print all pairs of users with identical userids. SOURCE
/src/cmd/join.c SEE ALSO
sort(1), comm(1), awk(1) BUGS
With default field separation, the collating sequence is that of sort -b -ky,y; with -t, the sequence is that of sort -tx -ky,y. One of the files must be randomly accessible. JOIN(1)
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