I have a report file that is generated every day by a scheduled process.
Each day the file is written to a directory named .../blah_blah/Y07/MM-DD-YY/reportmmddyy.tab
I want to copy all of this reports to a separate directory without having to do it one by one.
However, if I try
cp... (3 Replies)
So I am not sure if this should go in the shell forum or in the beginners. It is my first time posting on these forums.
I have a directory, main_dir lets say, with multiple sub directories (one_dir through onehundred_dir for example) and in each sub directory there is a test.txt. How would one... (2 Replies)
Hi,
I want to put the following values into Variables R2=0.999863 , V2=118.870318 , D2=-178.887511 and so on. There are six values for each variable R2-R8, V2-V8 and D2-D8, total of 18 values for all the variables. Can any one help me to copy and paste all the values in their respective... (2 Replies)
Hello,
I have a small question and i hope someone can help me, if i have 200 domains directories in my server under this directory
something like
now how i can copy one folder i have to this directories?
Thank You (5 Replies)
I have several directories and all those directories have .dat files in them. I want to copy all those .dat files to one directory say "collected_directory"
The problem is I don't want to overwrite files. So, if two file names match, I don't want the old file to be overwritten with a new one.
... (1 Reply)
I am using below scripts to copy all the files from multiple folders. By executing individually command i am able to copy all the files but using scripts only getting first file. System is ignoring the second CD and mget command.
HOST=server.com
USER=loginid
PASSWD="abc"
echo "open $HOST... (6 Replies)
my directory structure is like below:
basedir\
p.txt
q.htm
r.java
b\
abc.htm
xyz.java
c\
p.htm
q.java
rst.txt
my requirement is i want to copy all the files and directories... (0 Replies)
Hi,
Friends, i have a requirement where i need to rename my files residing in multiple sub directories and move them to one different directory along with some kind of directory indicator.
For eg:
test--is my parent directory and it has many files such as
a1.txt
a2.txt
a3.txt
... (5 Replies)
I have data of an excel files as given below,
file1
org1_1 1 1 2.5 100
org1_2 1 2 5.5 98
org1_3 1 3 7.2 88
file2
org2_1 1 1 2.5 100
org2_2 1 2 5.5 56
org2_3 1 3 7.2 70
I have multiple excel files as above shown.
I have to copy column 1, column 4 and paste into a new excel file as... (26 Replies)
Hey
im working on script that can compare 2 directory and check difference, then copy difference files in third diretory.
here is the story:
in folder one we have 12 subfolder and in each of them near 500 images hosted.
01 02 03 04 05 06 07 08 09 10 11 12
in folder 2 we have same subfolder... (2 Replies)
Discussion started by: nimafire
2 Replies
LEARN ABOUT DEBIAN
reprof
REPROF(1) User Commands REPROF(1)NAME
reprof - predict protein secondary structure and solvent accessibility
SYNOPSIS
reprof -i [query.blastPsiMat] [OPTIONS]
reprof -i [query.fasta] [OPTIONS]
reprof -i [query.blastPsiMat|query.fasta] --mutations [mutations.txt] [OPTIONS]
DESCRIPTION
Predict protein secondary structure and solvent accessibility.
Output Format
The output format is self-explanatory, i.e. the colums of the output are described in the output file itself.
OPTIONS -i, --input=FILE
Input BLAST PSSM matrix file (from Blast -Q option) or input (single) FASTA file.
-o, --out=FILE
Either an output file or a directory. If not provided or a directory, the suffix of the input filename (i.e. .fasta or .blastPsiMat) is
replaced to create an output filename.
--mutations=[all|FILE]
Either the keyword "all" to predict all possible mutations or a file containing mutations one per line such as "C12M" for C is mutated
to M on position 12:
C30Y
R31W
G48D
This mutation code is also attached to the output filename using "_". An additional file ending "_ORI" contains the prediction using
no evolutionary information even if a BLAST PSSM matrix was provided.
--modeldir=DIR
Directory where the model and feature files are stored. Default: /usr/share/reprof.
AUTHOR
Peter Hoenigschmid hoenigschmid@rostlab.org, Burkhard Rost
EXAMPLES
Prediction from BLAST PSSM matrix for best results:
reprof -i /usr/share/doc/reprof/examples/example.Q -o /tmp/example.Q.reprof
Prediction from FASTA file:
reprof -i /usr/share/doc/reprof/examples/example.fasta -o /tmp/example.fasta.reprof
Prediction from BLAST PSSM matrix file using the mutation mode:
reprof -i /usr/share/doc/reprof/examples/example.Q -o /tmp/mutations_example.Q.reprof --mutations /usr/share/doc/reprof/examples/mutations.txt
# Result files for the above call are going to be:
# /tmp/mutations_example.Q.{reprof,reprof_F172P,reprof_M1Q,reprof_N34Y,reprof_ORI} - see --mutations for a description of the extensions.
COPYRIGHT
This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.
You should have received a copy of the GNU General Public License along with this program. If not, see <http://www.gnu.org/licenses/>.
BUGS
https://rostlab.org/bugzilla3/enter_bug.cgi?product=reprof
SEE ALSO blast2(1)
http://rostlab.org/
1.0.1 2012-01-13 REPROF(1)