12-27-2019
Okay, I'm sure we can help with that. A few questions for clarity though:-
- Must the filename in the fastconcatg directory be the prefix of the directory that the source was found in?
- What do we do for a directory that doesn't have a file of that name in it? We could leave an empty marker file, miss it completely or perhaps something else.
If your source files would be found be the command
ls -l org*/dnaG.fasta then that's good. The problem about so many files is that you might exceed the command line length, but we can work on that if it become a problem.
For every directory/file found, the logic could be something like:-
- Get the directory part
- Get the number from the directory part
- Copy the file to the target directory with the source directory number as a prefix
Does that match your need or have I missed the point?
Do you have any further attempts yourself that we can work through?
Kind regards,
Robin
This User Gave Thanks to rbatte1 For This Post:
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LEARN ABOUT CENTOS
create_makefile
CREATE_MAKEFILE [FIXME: manual] CREATE_MAKEFILE
NAME
create_makefile - Creates Makefile.in and Makefile from a Makefile.am
SYNOPSIS
create_makefile [relativepath/Makefile] [relativepath]
DESCRIPTION
create_makefile creates the Makefile.in and Makefile in a subdirectory containing a Makefile.am. This script saves time compared to
re-running configure completely
Note that you must supply the path to the desired MakefileMakefile.am (though the final /Makefile may be omitted).
This script may be run from the toplevel directory (the one containing configure) or from one of it's subdirectories.
If the source directory is different from the build directory (see the environment variables below), it will be assumed that the
Makefile.am and Makefile.in belong beneath the source directory and that the Makefile belongs beneath the build directory.
This utility is part of the KDE Software Development Kit.
ENVIRONMENT
One of the following variables (but not both) should be set if the source directory is different from the build directory. If the build
directory is simply a subdirectory of the source directory, the simpler variable OBJ_SUBDIR should be used.
OBJ_SUBJDIR
Indicates that the build directory is in the given subdirectory of the source directory. For instance, if the source directory is
kdesdk and the build directory is kdesdk/obj-i386-linux, then OBJ_SUBDIR should be set to obj-i386-linux.
OBJ_REPLACEMENT
A sed expression that is used to transform the source directory into the build directory. For instance, if the source directory is
~/src/kdesdk and the build directory is ~/src/kdesdk-obj, then OBJ_REPLACEMENT should be set to s#kdesdk#kdesdk-obj#.
SEE ALSO
create_makefiles(1)
AUTHORS
create_makefile was written by David Faure<faure@kde.org> and others. This manual page was prepared by Ben Burton<bab@debian.org> for the
Debian GNU/Linux system (but may be used by others).
[FIXME: source] March 8, 2003 CREATE_MAKEFILE