Sponsored Content
Top Forums UNIX for Beginners Questions & Answers How to copy particular files from a multiple directories and paste in a new directory? Post 303042512 by rbatte1 on Friday 27th of December 2019 12:15:07 PM
Old 12-27-2019
Okay, I'm sure we can help with that. A few questions for clarity though:-
  • Must the filename in the fastconcatg directory be the prefix of the directory that the source was found in?
  • What do we do for a directory that doesn't have a file of that name in it? We could leave an empty marker file, miss it completely or perhaps something else.

If your source files would be found be the command ls -l org*/dnaG.fasta then that's good. The problem about so many files is that you might exceed the command line length, but we can work on that if it become a problem.

For every directory/file found, the logic could be something like:-
  • Get the directory part
  • Get the number from the directory part
  • Copy the file to the target directory with the source directory number as a prefix

Does that match your need or have I missed the point?

Do you have any further attempts yourself that we can work through?



Kind regards,
Robin
This User Gave Thanks to rbatte1 For This Post:
 

10 More Discussions You Might Find Interesting

1. UNIX for Dummies Questions & Answers

copy multiple files in different directories

I have a report file that is generated every day by a scheduled process. Each day the file is written to a directory named .../blah_blah/Y07/MM-DD-YY/reportmmddyy.tab I want to copy all of this reports to a separate directory without having to do it one by one. However, if I try cp... (3 Replies)
Discussion started by: ken2834
3 Replies

2. UNIX for Dummies Questions & Answers

Renaming files after their directory name in multiple sub directories

So I am not sure if this should go in the shell forum or in the beginners. It is my first time posting on these forums. I have a directory, main_dir lets say, with multiple sub directories (one_dir through onehundred_dir for example) and in each sub directory there is a test.txt. How would one... (2 Replies)
Discussion started by: robotsbite
2 Replies

3. UNIX for Dummies Questions & Answers

Copy/Paste data in files

Hi, I want to put the following values into Variables R2=0.999863 , V2=118.870318 , D2=-178.887511 and so on. There are six values for each variable R2-R8, V2-V8 and D2-D8, total of 18 values for all the variables. Can any one help me to copy and paste all the values in their respective... (2 Replies)
Discussion started by: sullah
2 Replies

4. Shell Programming and Scripting

Copy one folder to multiple directories

Hello, I have a small question and i hope someone can help me, if i have 200 domains directories in my server under this directory something like now how i can copy one folder i have to this directories? Thank You (5 Replies)
Discussion started by: GamGom
5 Replies

5. Shell Programming and Scripting

Copy files from multiple directories into one directory without overwriting them

I have several directories and all those directories have .dat files in them. I want to copy all those .dat files to one directory say "collected_directory" The problem is I don't want to overwrite files. So, if two file names match, I don't want the old file to be overwritten with a new one. ... (1 Reply)
Discussion started by: shoaibjameel123
1 Replies

6. UNIX for Advanced & Expert Users

FTP failed to copy mulitple files from multiple directory

I am using below scripts to copy all the files from multiple folders. By executing individually command i am able to copy all the files but using scripts only getting first file. System is ignoring the second CD and mget command. HOST=server.com USER=loginid PASSWD="abc" echo "open $HOST... (6 Replies)
Discussion started by: meetvipin
6 Replies

7. Shell Programming and Scripting

Copy files/directories excluding multiple paterns

my directory structure is like below: basedir\ p.txt q.htm r.java b\ abc.htm xyz.java c\ p.htm q.java rst.txt my requirement is i want to copy all the files and directories... (0 Replies)
Discussion started by: ajayyadavmca
0 Replies

8. Shell Programming and Scripting

Rename files from multiple directories along with directory indicator

Hi, Friends, i have a requirement where i need to rename my files residing in multiple sub directories and move them to one different directory along with some kind of directory indicator. For eg: test--is my parent directory and it has many files such as a1.txt a2.txt a3.txt ... (5 Replies)
Discussion started by: gnnsprapa
5 Replies

9. UNIX for Beginners Questions & Answers

How to copy a column of multiple files and paste into new excel file (next to column)?

I have data of an excel files as given below, file1 org1_1 1 1 2.5 100 org1_2 1 2 5.5 98 org1_3 1 3 7.2 88 file2 org2_1 1 1 2.5 100 org2_2 1 2 5.5 56 org2_3 1 3 7.2 70 I have multiple excel files as above shown. I have to copy column 1, column 4 and paste into a new excel file as... (26 Replies)
Discussion started by: dineshkumarsrk
26 Replies

10. Shell Programming and Scripting

Compare directories and copy differences (files) in a another directory

Hey im working on script that can compare 2 directory and check difference, then copy difference files in third diretory. here is the story: in folder one we have 12 subfolder and in each of them near 500 images hosted. 01 02 03 04 05 06 07 08 09 10 11 12 in folder 2 we have same subfolder... (2 Replies)
Discussion started by: nimafire
2 Replies
packingrules(4) 					     Kernel Interfaces Manual						   packingrules(4)

NAME
packingrules - packing rules file for cachefs DESCRIPTION
is a packing rules file for packingrules contains a list of directories and files that are to be packed. It also contains a list of direc- tories and files that are to be specifically excluded from packing. See cachefspack(1M). Many users choose to manually create the packing rules file and edit it by hand. Users can edit the packingrules (using any editor) to permanently change the packingrules file, or to gain access to more powerful options that are not available from the command line (such as the command). It is much easier to enter complex wildcard expressions by editing the packingrules file. Following is a description of the lines in a packing rules file. Blank lines and lines that begin with a pound sign are ignored. Lines can be continued by placing a backslash () immediately before the newline character. All other lines in the packingrules file have one of the following formats: This line identifies a directory (or pair of directories) under which files should be packed. At least one directory name must be specified. The arguments must be fully qualified path names and may include environment variables. This line enumerates a list of files and subdirectories beneath the current directory to be packed. This specification is recursive. That is, specifying the name of a directory automatically includes all files and subdirectories it contains. This line enumerates a list of files that are not to be packed. Regular expressions are permitted. There are important differences between the arguments to the and the statements. The arguments to statements can contain slashes and are interpreted as file names relative to the directories. The arguments to statements are simpler names or expressions that cannot contain slashes. An statement will not override a LIST statement. statements only exclude files that are found beneath listed directories. If the first name argument to a or an statement begins with an exclamation point the remainder of the statement will be executed as a com- mand that will be run in the current directory. The output of the command will be treated as a list of newline separated file names to be packed command) or to be excluded from the packing list command). For the command, the resulting file names will be interpreted relative to the enclosing directory. Blanks can be embedded in an argument by escaping them with a backslash () or enclosing the argument in double quotes (` " '). Double quotes can be passed in arguments by escaping the double quotes with a backslash (). lines only apply to the statement that precedes them. lines can appear before any statement (in which case they apply to all or after a statement (in which case they only apply to the that precedes them). Any number of these statements can occur in any combinations. The order is not important. EXAMPLES
The use of these statements is illustrated in the following packing rules file. # # Ignore junk files. # IGNORE core *.o *.bak *% # # Pack everything in the work subdirectory and in a few # favorite mailboxes. # BASE /net/bigserver/export/home/myname LIST work LIST m/incoming LIST m/action LIST m/pending # # Pack two important project directories but skip # all postscript output. # BASE /net/bigserver/export/projects $HOME/projects LIST poindexter epiphany IGNORE *.ps # # Pack the foonly package. # BASE /net/bigserver/opt/foonly /opt/foonly LIST !cat .packinglist # # Also pack the latest executables for the standard # build environment. # BASE /net/bigserver/export/buildenv $HOME/buildenv LIST !find . -type f -a -perm -111 -a -print AUTHOR
was developed by Sun Microsystems, Inc. SEE ALSO
cachefspack(1M). packingrules(4)
All times are GMT -4. The time now is 11:11 PM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy