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Top Forums UNIX for Beginners Questions & Answers How to copy particular files from a multiple directories and paste in a new directory? Post 303042512 by rbatte1 on Friday 27th of December 2019 12:15:07 PM
Old 12-27-2019
Okay, I'm sure we can help with that. A few questions for clarity though:-
  • Must the filename in the fastconcatg directory be the prefix of the directory that the source was found in?
  • What do we do for a directory that doesn't have a file of that name in it? We could leave an empty marker file, miss it completely or perhaps something else.

If your source files would be found be the command ls -l org*/dnaG.fasta then that's good. The problem about so many files is that you might exceed the command line length, but we can work on that if it become a problem.

For every directory/file found, the logic could be something like:-
  • Get the directory part
  • Get the number from the directory part
  • Copy the file to the target directory with the source directory number as a prefix

Does that match your need or have I missed the point?

Do you have any further attempts yourself that we can work through?



Kind regards,
Robin
This User Gave Thanks to rbatte1 For This Post:
 

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lib(3pm)						 Perl Programmers Reference Guide						  lib(3pm)

NAME
lib - manipulate @INC at compile time SYNOPSIS
use lib LIST; no lib LIST; DESCRIPTION
This is a small simple module which simplifies the manipulation of @INC at compile time. It is typically used to add extra directories to perl's search path so that later "use" or "require" statements will find modules which are not located on perl's default search path. Adding directories to @INC The parameters to "use lib" are added to the start of the perl search path. Saying use lib LIST; is almost the same as saying BEGIN { unshift(@INC, LIST) } For each directory in LIST (called $dir here) the lib module also checks to see if a directory called $dir/$archname/auto exists. If so the $dir/$archname directory is assumed to be a corresponding architecture specific directory and is added to @INC in front of $dir. lib.pm also checks if directories called $dir/$version and $dir/$version/$archname exist and adds these directories to @INC. The current value of $archname can be found with this command: perl -V:archname The corresponding command to get the current value of $version is: perl -V:version To avoid memory leaks, all trailing duplicate entries in @INC are removed. Deleting directories from @INC You should normally only add directories to @INC. If you need to delete directories from @INC take care to only delete those which you added yourself or which you are certain are not needed by other modules in your script. Other modules may have added directories which they need for correct operation. The "no lib" statement deletes all instances of each named directory from @INC. For each directory in LIST (called $dir here) the lib module also checks to see if a directory called $dir/$archname/auto exists. If so the $dir/$archname directory is assumed to be a corresponding architecture specific directory and is also deleted from @INC. Restoring original @INC When the lib module is first loaded it records the current value of @INC in an array @lib::ORIG_INC. To restore @INC to that value you can say @INC = @lib::ORIG_INC; CAVEATS
In order to keep lib.pm small and simple, it only works with Unix filepaths. This doesn't mean it only works on Unix, but non-Unix users must first translate their file paths to Unix conventions. # VMS users wanting to put [.stuff.moo] into # their @INC would write use lib 'stuff/moo'; NOTES
In the future, this module will likely use File::Spec for determining paths, as it does now for Mac OS (where Unix-style or Mac-style paths work, and Unix-style paths are converted properly to Mac-style paths before being added to @INC). If you try to add a file to @INC as follows: use lib 'this_is_a_file.txt'; "lib" will warn about this. The sole exceptions are files with the ".par" extension which are intended to be used as libraries. SEE ALSO
FindBin - optional module which deals with paths relative to the source file. PAR - optional module which can treat ".par" files as Perl libraries. AUTHOR
Tim Bunce, 2nd June 1995. "lib" is maintained by the perl5-porters. Please direct any questions to the canonical mailing list. Anything that is applicable to the CPAN release can be sent to its maintainer, though. Maintainer: The Perl5-Porters <perl5-porters@perl.org> Maintainer of the CPAN release: Steffen Mueller <smueller@cpan.org> COPYRIGHT AND LICENSE
This package has been part of the perl core since perl 5.001. It has been released separately to CPAN so older installations can benefit from bug fixes. This package has the same copyright and license as the perl core. perl v5.16.2 2013-08-25 lib(3pm)
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