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Thank You.
The UNIX and Linux Forums
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The variables var1 and var2 actually contain the literal strings you have assigned to them (i.e S*R1.fastq.gz and S*R2.fastq.gz) these are expanded by the shell when they are build into the echo command. To demonstrate:
See how using double quotes protects the string from being expanded by the shell. You could do something like this to have the shell expand the wildcard: --- Post updated at 08:13 AM ---
One approach to this problem is to populate an array with the expanded filenames and then step thru it comparing with the next entry like this:
Last edited by Chubler_XL; 11-25-2019 at 05:27 PM..
Reason: Updated search/replace to avoid matching on R1 in early part of filename
These 2 Users Gave Thanks to Chubler_XL For This Post:
Daily we are getting some datafiles to our unix server location FTPIN.
Incoming File names will be present in the location "/xyz/test/" as below:
"infile_A1_YYYYMMDD",
"infile_A2_YYYYMMDD",
"infile_B1_YYYYMMDD",
"infile_C1_YYYYMMDD"
"infile_C2_YYYYMMDD"
Where A, B and C are the... (3 Replies)
I have a file like this
QUEUE: <ITEM(69)> "/NLA///ACHO_EQU_IDX"
Q_KEY: <ITEM(69)> "/NLA///ACHO_EQU_IDX"
Q_TYPE: <VSTR(32)> "GEN_VSTR_INDEX"
... (1 Reply)
Hi All,
I have the following script and would like to add page up and down functionality to be able to stroll through the list.
Is this possible?
If so, Any pointers to examples, info, tips, suggestions would be appreciated.
BTW, Any suggestion for better practices on the following code... (5 Replies)
I got many pair files, which only have small difference, such as more space, or more empty line, and some unreadable characters.
If list by commend "diff", I can see many many difference.
So I'd like to write a script to compare the pair files, if 95% contents are same, I will think they are... (2 Replies)
Hi everyone. How can I merge two files, where each file has 2 columns and the first columns in both files are similar? I want all in a file of 4 columns; join command removes the duplicate columns.
1 Dave
2 Mark
3 Paul
1 Apple
2 Orange
3 Grapes
to get it like this in the 3rd file:... (9 Replies)
Hello all,
I have a server that is running AIX, running a tool that converts various printstreams (AFP/Metadata) to PDF. This is done using a rexx script and an off the shelf utility.
Each report (there's around 125) uses a certain script file, it's basically a text file.
I am trying... (5 Replies)
Hi,
I have a file1 like this:
ABAT
ABCA1
ABCC1
ABCC5
ABCC8
ABCE1
ABHD2
ABL1
CAMTA1
ACBD3
ACCN1
And I have a second file like this:
chr19 46118590 46119564 MACS_peak_1499 3100.00 chr19 46122009 46148405 CYP2B7P1 -2445
chr1 7430312 7430990... (7 Replies)
I need to add a selection within the bash function below and am having some trouble doing so.
phox2b() {
printf "\n\n"
printf "What is the id of the patient getting Phox2B analysis : "; read id
printf "Is this an intronic variant? Y/N "; read match_choice
case... (5 Replies)
Hello,
I've been working on a bash script to parse through firewall logs (cisco). I'm nearing the end and have a dilemma.
My data looks as such (actual data is several gigs worth of logs - without the headers):
sourceIP destinationIP destinationProtocol destinationPort
1.1.1.1 2.2.2.2 ... (2 Replies)
Hi,
I need to compare the /etc/passwd files from 2 servers, and extract the users that are similar in these two files. I sorted the 2 files based on the user IDs (UID) (3rd column). I first sorted the files using the username (1st column), however when I use comm to compare the files there is no... (1 Reply)