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Top Forums UNIX for Beginners Questions & Answers awk for matching fields between files with repeated records Post 303041181 by jvoot on Sunday 17th of November 2019 12:48:25 AM
Old 11-17-2019
awk for matching fields between files with repeated records

Hello all, I am having trouble with what should be an easy task, but seem to be missing something fundamental. I have two files, with File 1 consisting of a single field of many thousands of records. I also have File 2 with two fields and many thousands of records.

My goal is that when $1 of File 1 matches $1 of File 2, then print $1 and $2 of File 2, or alternatively, print $1 from File 1 with $2 of File 2 when $1 and $2 match between the files. The problem is that File 1 has repeated records in it. Thus when I apply awk 'FNR==NR{a[$1]; next} $1 in a' File 1 File 2 I can get all matches where $1 in File 1 matches $1 in File 2 and then output $1 && $2 in File 2, but without the repeated records. However, I need the order of the records in File 1 to be retained as well as all of the repeated records.

File 1
Code:
ABC
DEF
XYZ
ABC
DEF
ABC
XYZ

File 2
Code:
ABC 123
DEF 345
XYZ 678

Desired Output:
Code:
ABC 123
DEF 345
XYZ 678
ABC 123
DEF 345
ABC 123
XYZ 678

NB: The records are much more varied and repeats much further spread out in the actual file than the simplified examples here.

I had a somewhat similar, albeit more involved, issue in the past that RudiC helped me with (see here), but I am having trouble applying his code to this simpler example.

I got it close with this:
Code:
awk 'NR==FNR {q=$1; $1=""; T[q "," ++C[q]] = $0; next} {q=$1; X=q "," ++D[q]; printf "%s\t",  $0; if(X in T); print T[X]}' File 2 File 1

While this attempt printed all of the repeated records of File 1, it only supplied $2 from File 2 along with $1 of File 1 on the first time it appears, but not every time, such as the following:

Code:
ABC 123
DEF 345
XYZ 678
ABC
DEF
ABC
XYZ

Thanks so much in advance.

Thanks so much.

Last edited by vbe; 11-17-2019 at 10:46 AM..
 

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MARC::File::XML(3pm)					User Contributed Perl Documentation				      MARC::File::XML(3pm)

NAME
MARC::File::XML - Work with MARC data encoded as XML SYNOPSIS
## Loading with USE options use MARC::File::XML ( BinaryEncoding => 'utf8', RecordFormat => 'UNIMARC' ); ## Setting the record format without USE options MARC::File::XML->default_record_format('USMARC'); ## reading with MARC::Batch my $batch = MARC::Batch->new( 'XML', $filename ); my $record = $batch->next(); ## or reading with MARC::File::XML explicitly my $file = MARC::File::XML->in( $filename ); my $record = $file->next(); ## serialize a single MARC::Record object as XML print $record->as_xml(); ## write a bunch of records to a file my $file = MARC::File::XML->out( 'myfile.xml' ); $file->write( $record1 ); $file->write( $record2 ); $file->write( $record3 ); $file->close(); ## instead of writing to disk, get the xml directly my $xml = join( " ", MARC::File::XML::header(), MARC::File::XML::record( $record1 ), MARC::File::XML::record( $record2 ), MARC::File::XML::footer() ); DESCRIPTION
The MARC-XML distribution is an extension to the MARC-Record distribution for working with MARC21 data that is encoded as XML. The XML encoding used is the MARC21slim schema supplied by the Library of Congress. More information may be obtained here: http://www.loc.gov/standards/marcxml/ You must have MARC::Record installed to use MARC::File::XML. In fact once you install the MARC-XML distribution you will most likely not use it directly, but will have an additional file format available to you when you use MARC::Batch. This version of MARC-XML supersedes an the versions ending with 0.25 which were used with the MARC.pm framework. MARC-XML now uses MARC::Record exclusively. If you have any questions or would like to contribute to this module please sign on to the perl4lib list. More information about perl4lib is available at <http://perl4lib.perl.org>. METHODS
When you use MARC::File::XML your MARC::Record objects will have two new additional methods available to them: MARC::File::XML->default_record_format([$format]) Sets or returns the default record format used by MARC::File::XML. Valid formats are MARC21, USMARC, UNIMARC and UNIMARCAUTH. MARC::File::XML->default_record_format('UNIMARC'); as_xml() Returns a MARC::Record object serialized in XML. You can pass an optional format parameter to tell MARC::File::XML what type of record (USMARC, UNIMARC, UNIMARCAUTH) you are serializing. print $record->as_xml([$format]); as_xml_record([$format]) Returns a MARC::Record object serialized in XML without a collection wrapper. You can pass an optional format parameter to tell MARC::File::XML what type of record (USMARC, UNIMARC, UNIMARCAUTH) you are serializing. print $record->as_xml_record('UNIMARC'); new_from_xml([$encoding, $format]) If you have a chunk of XML and you want a record object for it you can use this method to generate a MARC::Record object. You can pass an optional encoding parameter to specify which encoding (UTF-8 or MARC-8) you would like the resulting record to be in. You can also pass a format parameter to specify the source record type, such as UNIMARC, UNIMARCAUTH, USMARC or MARC21. my $record = MARC::Record->new_from_xml( $xml, $encoding, $format ); Note: only works for single record XML chunks. If you want to write records as XML to a file you can use out() with write() to serialize more than one record as XML. out() A constructor for creating a MARC::File::XML object that can write XML to a file. You must pass in the name of a file to write XML to. If the $encoding parameter or the DefaultEncoding (see above) is set to UTF-8 then the binmode of the output file will be set appropriately. my $file = MARC::File::XML->out( $filename [, $encoding] ); write() Used in tandem with out() to write records to a file. my $file = MARC::File::XML->out( $filename ); $file->write( $record1 ); $file->write( $record2 ); close() When writing records to disk the filehandle is automatically closed when you the MARC::File::XML object goes out of scope. If you want to close it explicitly use the close() method. If you want to generate batches of records as XML, but don't want to write to disk you'll have to use header(), record() and footer() to generate the different portions. $xml = join( " ", MARC::File::XML::header(), MARC::File::XML::record( $record1 ), MARC::File::XML::record( $record2 ), MARC::File::XML::record( $record3 ), MARC::File::XML::footer() ); header() Returns a string of XML to use as the header to your XML file. footer() Returns a string of XML to use at the end of your XML file. record() Returns a chunk of XML suitable for placement between the header and the footer. decode() You probably don't ever want to call this method directly. If you do you should pass in a chunk of XML as the argument. It is normally invoked by a call to next(), see MARC::Batch or MARC::File. encode() You probably want to use the as_xml() method on your MARC::Record object instead of calling this directly. But if you want to you just need to pass in the MARC::Record object you wish to encode as XML, and you will be returned the XML as a scalar. TODO
o Support for callback filters in decode(). SEE ALSO
<http://www.loc.gov/standards/marcxml/> MARC::File::USMARC MARC::Batch MARC::Record AUTHORS
o Ed Summers <ehs@pobox.com> perl v5.14.2 2011-02-11 MARC::File::XML(3pm)
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