Dear Rudic,
Below script can rename the characters in gene1.fasta specified in list.txt.
However, it is not based on the position. Its purely based on the matching strings between the two files. But, here my problem is different, I tried workout like this
, but my list.txt is not having common strings, so I can not rename sequentially. That is why I seek your help.
Last edited by dineshkumarsrk; 11-13-2019 at 04:12 AM..
Hi ,
I have a typical situation. I have 4 files and with different headers (number of headers is varible ).
I need to make such a merged file which will have headers combined from all files (comman coluns should appear once only).
For example -
File 1
H1|H2|H3|H4
11|12|13|14
21|22|23|23... (1 Reply)
Hi Guys,
While I was writing one shell script , I just got struck at this point.
I need to extract words from a file at some specified position and do some comparison operation and need to replace the extracted word with another word.
Eg : I like Orange very much.
I need to replace... (19 Replies)
Hi,
I am new to unix. I want to delete 2 words placed at position say for example at 23rd and 45th position in a line. I used sed but couldnt achieve this.
Example: the file contains 2 lines
12345 98765 "12345" 876
12345 98765 "64578" 876
I want to delete " placed at position 13 and 19... (4 Replies)
I have a file with thousands of sequences that looks like this:
I need to replace the headers using a second file
Thus, I will end up having the following file:
I am looking for an AWK script that I can easily plug in my current pipeline.
Any help will be greatly appreciated! (6 Replies)
Hi, I have a file1 of many long sequences, each preceded by a unique header line. file2 is 3-columns list: headers name, start position, end position. I'd like to extract the sequence region of file1 specified in file2.
Based on a post elsewhere, I found the code:
awk... (2 Replies)
Hi,
I am unable to find the right option to extract the data in the fixed width file.
sample data
abcd1234xgyhsyshijfkfk
hujk9876 io xgla
loki8787eljuwoejroiweo
dkfj9098 dja
Search based on position 8-9="xg" and print the entire row
output
... (4 Replies)
OS : Linux 2.6x
Shell : Korn
In a single file , how can I identify all the Uniqe values at a specific character position and length of each record ,
and simultaneously SPLIT the records of the file based on each of these values and write them in seperate files .
Lets say :
a) I want to... (4 Replies)
I have two files. File1 is shown below.
>153L:B|PDBID|CHAIN|SEQUENCE
RTDCYGNVNRIDTTGASCKTAKPEGLSYCGVSASKKIAERDLQAMDRYKTIIKKVGEKLCVEPAVIAGIISRESHAGKVL
KNGWGDRGNGFGLMQVDKRSHKPQGTWNGEVHITQGTTILINFIKTIQKKFPSWTKDQQLKGGISAYNAGAGNVRSYARM
DIGTTHDDYANDVVARAQYYKQHGY
>16VP:A|PDBID|CHAIN|SEQUENCE... (7 Replies)
Hi,
I have a file with multiple lines(fixed width dat file). I want to search for '02' in the positions 45-46 and if available, in that lines, I need to replace value in position 359 with blank. As I am new to unix, I am not able to figure out how to do this. Can you please help me to achieve... (9 Replies)
Discussion started by: Pradhikshan
9 Replies
LEARN ABOUT DEBIAN
shishi_as_check_cname
shishi_as_check_cname(3) shishi shishi_as_check_cname(3)NAME
shishi_as_check_cname - API function
SYNOPSIS
#include <shishi.h>
int shishi_as_check_cname(Shishi * handle, Shishi_asn1 asreq, Shishi_asn1 asrep);
ARGUMENTS
Shishi * handle
shishi handle as allocated by shishi_init().
Shishi_asn1 asreq
AS-REQ to compare client name field in.
Shishi_asn1 asrep
AS-REP to compare client name field in.
DESCRIPTION
Verify that AS-REQ.req-body.realm and AS-REP.crealm fields matches. This is one of the steps that has to be performed when processing a
AS-REQ and AS-REP exchange, see shishi_kdc_process().
RETURN VALUE
Returns SHISHI_OK if successful, SHISHI_CNAME_MISMATCH if the values differ, or an error code.
REPORTING BUGS
Report bugs to <bug-shishi@gnu.org>.
COPYRIGHT
Copyright (C) 2002-2010 Simon Josefsson.
Copying and distribution of this file, with or without modification, are permitted in any medium without royalty provided the copyright
notice and this notice are preserved.
SEE ALSO
The full documentation for shishi is maintained as a Texinfo manual. If the info and shishi programs are properly installed at your site,
the command
info shishi
should give you access to the complete manual.
shishi 1.0.1 shishi_as_check_cname(3)