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Top Forums UNIX for Beginners Questions & Answers Is it possible to rename fasta headers based on its position specified in another file? Post 303041050 by dineshkumarsrk on Wednesday 13th of November 2019 03:06:46 AM
Old 11-13-2019
Dear Rudic,
Below script can rename the characters in gene1.fasta specified in list.txt.
Code:
awk 'FNR==NR{REP[$1]=$2; next} {for (r in REP) gsub(r, REP[r])}1' FS="=" list.txt gene1.fasta

However, it is not based on the position. Its purely based on the matching strings between the two files. But, here my problem is different, I tried workout like this
Code:
++i

, but my list.txt is not having common strings, so I can not rename sequentially. That is why I seek your help.

Last edited by dineshkumarsrk; 11-13-2019 at 04:12 AM..
 

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shishi_as_check_crealm(3)					      shishi						 shishi_as_check_crealm(3)

NAME
shishi_as_check_crealm - API function SYNOPSIS
#include <shishi.h> int shishi_as_check_crealm(Shishi * handle, Shishi_asn1 asreq, Shishi_asn1 asrep); ARGUMENTS
Shishi * handle shishi handle as allocated by shishi_init(). Shishi_asn1 asreq AS-REQ to compare realm field in. Shishi_asn1 asrep AS-REP to compare realm field in. DESCRIPTION
Verify that AS-REQ.req-body.realm and AS-REP.crealm fields matches. This is one of the steps that has to be performed when processing a AS-REQ and AS-REP exchange, see shishi_kdc_process(). RETURN VALUE
Returns SHISHI_OK if successful, SHISHI_REALM_MISMATCH if the values differ, or an error code. REPORTING BUGS
Report bugs to <bug-shishi@gnu.org>. COPYRIGHT
Copyright (C) 2002-2010 Simon Josefsson. Copying and distribution of this file, with or without modification, are permitted in any medium without royalty provided the copyright notice and this notice are preserved. SEE ALSO
The full documentation for shishi is maintained as a Texinfo manual. If the info and shishi programs are properly installed at your site, the command info shishi should give you access to the complete manual. shishi 1.0.1 shishi_as_check_crealm(3)
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