Sponsored Content
Top Forums UNIX for Beginners Questions & Answers Is it possible to rename fasta headers based on its position specified in another file? Post 303041048 by RudiC on Wednesday 13th of November 2019 02:37:19 AM
Old 11-13-2019
Any attempts / ideas / thoughts from your side? Applying what you learned in here?
 

10 More Discussions You Might Find Interesting

1. Shell Programming and Scripting

Merging of files with different headers to make combined headers file

Hi , I have a typical situation. I have 4 files and with different headers (number of headers is varible ). I need to make such a merged file which will have headers combined from all files (comman coluns should appear once only). For example - File 1 H1|H2|H3|H4 11|12|13|14 21|22|23|23... (1 Reply)
Discussion started by: marut_ashu
1 Replies

2. UNIX for Dummies Questions & Answers

To Extract words from File based on Position

Hi Guys, While I was writing one shell script , I just got struck at this point. I need to extract words from a file at some specified position and do some comparison operation and need to replace the extracted word with another word. Eg : I like Orange very much. I need to replace... (19 Replies)
Discussion started by: kuttu123
19 Replies

3. UNIX for Dummies Questions & Answers

Script to delete a word based on position in a file

Hi, I am new to unix. I want to delete 2 words placed at position say for example at 23rd and 45th position in a line. I used sed but couldnt achieve this. Example: the file contains 2 lines 12345 98765 "12345" 876 12345 98765 "64578" 876 I want to delete " placed at position 13 and 19... (4 Replies)
Discussion started by: nbks2u
4 Replies

4. Shell Programming and Scripting

Replacing headers based on a second file

I have a file with thousands of sequences that looks like this: I need to replace the headers using a second file Thus, I will end up having the following file: I am looking for an AWK script that I can easily plug in my current pipeline. Any help will be greatly appreciated! (6 Replies)
Discussion started by: Xterra
6 Replies

5. UNIX for Dummies Questions & Answers

extract regions of file based on start and end position

Hi, I have a file1 of many long sequences, each preceded by a unique header line. file2 is 3-columns list: headers name, start position, end position. I'd like to extract the sequence region of file1 specified in file2. Based on a post elsewhere, I found the code: awk... (2 Replies)
Discussion started by: pathunkathunk
2 Replies

6. Shell Programming and Scripting

Fixed width file search based on position value

Hi, I am unable to find the right option to extract the data in the fixed width file. sample data abcd1234xgyhsyshijfkfk hujk9876 io xgla loki8787eljuwoejroiweo dkfj9098 dja Search based on position 8-9="xg" and print the entire row output ... (4 Replies)
Discussion started by: onesuri
4 Replies

7. Shell Programming and Scripting

Split file based on distinct value at specific position

OS : Linux 2.6x Shell : Korn In a single file , how can I identify all the Uniqe values at a specific character position and length of each record , and simultaneously SPLIT the records of the file based on each of these values and write them in seperate files . Lets say : a) I want to... (4 Replies)
Discussion started by: kumarjt
4 Replies

8. Shell Programming and Scripting

Extract sequences from a FASTA file based on another file

I have two files. File1 is shown below. >153L:B|PDBID|CHAIN|SEQUENCE RTDCYGNVNRIDTTGASCKTAKPEGLSYCGVSASKKIAERDLQAMDRYKTIIKKVGEKLCVEPAVIAGIISRESHAGKVL KNGWGDRGNGFGLMQVDKRSHKPQGTWNGEVHITQGTTILINFIKTIQKKFPSWTKDQQLKGGISAYNAGAGNVRSYARM DIGTTHDDYANDVVARAQYYKQHGY >16VP:A|PDBID|CHAIN|SEQUENCE... (7 Replies)
Discussion started by: nelsonfrans
7 Replies

9. UNIX for Dummies Questions & Answers

Append file name to fasta file headers in Linux

How do we append the file name to fasta file headers in multiple fasta-files in Linux? (10 Replies)
Discussion started by: Mauve
10 Replies

10. Shell Programming and Scripting

Search for a string at a particular position and replace with blank based on position

Hi, I have a file with multiple lines(fixed width dat file). I want to search for '02' in the positions 45-46 and if available, in that lines, I need to replace value in position 359 with blank. As I am new to unix, I am not able to figure out how to do this. Can you please help me to achieve... (9 Replies)
Discussion started by: Pradhikshan
9 Replies
xcompmgr(1)						      General Commands Manual						       xcompmgr(1)

NAME
xcompmgr - sample X compositing manager SYNOPSIS
xcompmgr [-d display] [-r radius] [-o opacity] [-l left-offset] [-t top-offset] [-acCfFnsS] DESCRIPTION
xcompmgr is a sample compositing manager for X servers supporting the XFIXES, DAMAGE, and COMPOSITE extensions. It enables basic eye-candy effects. OPTIONS
-d display Specifies the display to manage. -r radius Specifies the blur radius for client-side shadows. -o opacity Specifies the opacity for client-side shadows. -l left-offset Specifies the left offset for client-side shadows. -t top-offset Specifies the top offset for client-side shadows. -I fade-in-step Specifies the opacity change between steps while fading in. -O fade-out-step Specifies the opacity change between steps while fading out. -D fade-delta Specifies the time (in milliseconds) between steps in a fade. -a Automatic server-side compositing. This instructs the server to use the standard composition rules. Useful for debugging. -c Client-side compositing with soft shadows and translucency support. -f When -c is specified, enables a smooth fade effect for transient windows like menus, and for all windows on hide and restore events. -n Simple client-side compositing. -s Server-side compositing with hard-edged shadows. -C When -c is specified, attempts to avoid painting shadows on panels and docks. -F When -f is specified, also enables the fade effect when windows change their opacity, as with transset(1). -S Enables synchronous operation. Useful for debugging. BUGS
Probably. Please report any you find to http://bugs.freedesktop.org/. AUTHORS
Keith Packard, with contributions from Matthew Allum, Eric Anholt, Dan Doel, Thomas Luebking, Matthew Hawn, Ely Levy, Phil Blundell, and Carl Worth. xcompmgr(1)
All times are GMT -4. The time now is 03:34 PM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy