Format specifier for sscanf() in C Post: 303040623

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Top Forums Programming Format specifier for sscanf() in C Post 303040623 by yifangt on Saturday 2nd of November 2019 08:35:57 AM

11-02-2019

Registered User

Format specifier for sscanf() in C

Hello, I have formatted lines delimited by colon ":", and I need to parse the line into two parts with sscanf() with format specifiers.
infile.txt:

Code:

Sample Name: sample1
SNPs                         : 91
MNPs                         : 1
Insertions                   : 5
Deletions                    : 2
Indels                       : 0
Same as reference            : 1
Missing Genotype             : 44
SNP Transitions/Transversions: 1.74 (73/42)
Total Het/Hom ratio          : 2.96 (74/25)

And here is my code fragment:

Code:

char line[256];     //for row read from file
char name[32];      //1st part (key part) parsed from each line[]
char str1[8];       //2nd part (value part) parsed from each line[]

sscanf(line, "%[^:] : %s", name, str1);      //scan in two halves delimited by ":", in the 2nd half, only take the first part delimited by space/tab
                                             //e.g. line1: Sample Name-> name; sample1 -> str1 
                                             //line10: Total Het/Hom ratio -> name; 2.96-> str1,  discard (74/25)

There may not be space/tab before or after the colon. Ignoring the float/integer data type for numbers at this moment.
For each line I could not get the first half to name, and the first part after ":" into str1. The problem is sscanf() does not stop at the end of each line. Spent some time reading the manpage of sscanf() and my old post, could not figure it out myself.
What is wrong with my sscanf() line? Thanks a lot.

Last edited by yifangt; 11-02-2019 at 01:54 PM.. Reason: typo and add color

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gchem3d

GCHEM3D(1)						       gnome-chemistry-utils							GCHEM3D(1)

NAME

       gchem3d - a small chemical viewer application

SYNOPSIS

       gchem3d [OPTION(S)...] [FILE...]

DESCRIPTION

       gchem3d is a small chemical viewer application, which can show several chemical file formats.

OPTIONS

       The following options are accepted:

       -b COLOR, --bgcolor=COLOR
	   Use the given color as background color.  COLOR can be one of "black" (default), "white", "#rrggbb" (don't forget to escape the "#"
	   character in the shell).

       -d MODEL, --display3d=MODEL
	   Choose how molecules are displayed.	MODEL can be one of "BallnStick" (default), "SpaceFill".

       -?, --help
	   Show application help options.

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	   Print all or just a group of help options. These options are not documented here. Instead see gtk-options(7) and gnome-options(7).

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SEE ALSO

       gnome-options(7), gtk-options(7)

AUTHORS

       Jean Brefort <jean.brefort@normalesup.org>
	   Program author.

       Daniel Leidert <daniel.leidert@wgdd.de>
	   Manpage author.

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gcu 0.12				      $Date: 2009-03-19 10:53:47 +0100 (jeu. 19 mars 2009) $					GCHEM3D(1)