Hopefully someone here can point me in the correct direction.
I'm working on a username migration and am trying to map my users ols usernames to the new ones.
Right now every user has a username of firstname.lastname i.e. john.doe
I'm trying to create a bash or python script that will take... (3 Replies)
Hi,
I am having a file of dna sequences in fasta format which look like this:
>admin_1_45
atatagcaga
>admin_1_46
atatagcagaatatatat
with many such thousands of sequences in a single file. I want to the replace the accession Id "admin_1_45" similarly in following sequences to... (5 Replies)
I have two files. File1 is shown below.
>153L:B|PDBID|CHAIN|SEQUENCE
RTDCYGNVNRIDTTGASCKTAKPEGLSYCGVSASKKIAERDLQAMDRYKTIIKKVGEKLCVEPAVIAGIISRESHAGKVL
KNGWGDRGNGFGLMQVDKRSHKPQGTWNGEVHITQGTTILINFIKTIQKKFPSWTKDQQLKGGISAYNAGAGNVRSYARM
DIGTTHDDYANDVVARAQYYKQHGY
>16VP:A|PDBID|CHAIN|SEQUENCE... (7 Replies)
I have a fasta file as follows
>sp|O15090|FABP4_HUMAN Fatty acid-binding protein, adipocyte OS=Homo sapiens GN=FABP4 PE=1 SV=3
MCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNMIISVNGDVITIKSESTFKN
TEISFILGQEFDEVTADDRKVKSTITLDGGVLVHVQKWDGKSTTIKRKREDDKLVVECVM
KGVTSTRVYERA
>sp|L18484|AP2A2_RAT AP-2... (3 Replies)
Hi
How can I extract sequences from a fasta file with respect a certain criteria? The beginning of my file (containing in total more than 1000 sequences) looks like this:
>H8V34IS02I59VP
SDACNDLTIALLQIAREVRVCNPTFSFRWHPQVKDEVMRECFDCIRQGLG
YPSMRNDPILIANCMNWHGHPLEEARQWVHQACMSPCPSTKHGFQPFRMA... (6 Replies)
Hi,
I need some help with modifying fasta headers.
I have a fasta file with thousands of contigs and I need to modify their headers with the information obtained from a second file.
File 1 contains the fasta sequences:
>contig0001 length=11115 numreads=10777
agatgtagatctct... (6 Replies)
Hi,
I have a fasta file with multiple sequences. How can i get only unique sequences from the file.
For example
my_file.fasta
>seq1
TCTCAAAGAAAGCTGTGCTGCATACTGTACAAAACTTTGTCTGGAGAGATGGAGAATCTCATTGACTTTACAGGTGTGGACGGTCTTCAGAGATGGCTCAAGCTAACATTCCCTGACACACCTATAGGGAAAGAGCTAAC
>seq2... (3 Replies)
I could calculate the length of entire fasta sequences by following command,
awk '/^>/{if (l!="") print l; print; l=0; next}{l+=length($0)}END{print l}' unique.fasta
But, I need to calculate the length of a particular fasta sequence specified/listed in another txt file. The results to to be... (14 Replies)
I've been struggling with this one for quite a while and cannot seem to find a solution for this find/replace scenario. Perhaps I'm getting rusty.
I have a file that contains a number of metrics (exactly 3 fields per line) from a few appliances that are collected in parallel. To identify the... (3 Replies)
Hi,
I have to add 7 bases of specific nucleotide at the beginning and ending of all the fasta sequences of a file. For example, I have a multi fasta file namely test.fasta as given below
test.fasta
>TalAA18_Xoo_CIAT_NZ_CP033194.1:_2936369-2939570:+1... (1 Reply)
Discussion started by: dineshkumarsrk
1 Replies
LEARN ABOUT MOJAVE
locale::currency
Locale::Currency(3pm) Perl Programmers Reference Guide Locale::Currency(3pm)NAME
Locale::Currency - standard codes for currency identification
SYNOPSIS
use Locale::Currency;
$curr = code2currency('usd'); # $curr gets 'US Dollar'
$code = currency2code('Euro'); # $code gets 'eur'
@codes = all_currency_codes();
@names = all_currency_names();
DESCRIPTION
The "Locale::Currency" module provides access to standard codes used for identifying currencies and funds, such as those defined in ISO
4217.
Most of the routines take an optional additional argument which specifies the code set to use. If not specified, the default ISO 4217
three-letter codes will be used.
SUPPORTED CODE SETS
There are several different code sets you can use for identifying currencies. A code set may be specified using either a name, or a
constant that is automatically exported by this module.
For example, the two are equivalent:
$curr = code2currency('usd','alpha');
$curr = code2currency('usd',LOCALE_CURR_ALPHA);
The codesets currently supported are:
alpha, LOCALE_CURR_ALPHA
This is a set of three-letter (uppercase) codes from ISO 4217 such as EUR for Euro.
Two of the codes specified by the standard (XTS which is reserved for testing purposes and XXX which is for transactions where no
currency is involved) are omitted.
This is the default code set.
num, LOCALE_CURR_NUMERIC
This is the set of three-digit numeric codes from ISO 4217.
ROUTINES
code2currency ( CODE [,CODESET] )
currency2code ( NAME [,CODESET] )
currency_code2code ( CODE ,CODESET ,CODESET2 )
all_currency_codes ( [CODESET] )
all_currency_names ( [CODESET] )
Locale::Currency::rename_currency ( CODE ,NEW_NAME [,CODESET] )
Locale::Currency::add_currency ( CODE ,NAME [,CODESET] )
Locale::Currency::delete_currency ( CODE [,CODESET] )
Locale::Currency::add_currency_alias ( NAME ,NEW_NAME )
Locale::Currency::delete_currency_alias ( NAME )
Locale::Currency::rename_currency_code ( CODE ,NEW_CODE [,CODESET] )
Locale::Currency::add_currency_code_alias ( CODE ,NEW_CODE [,CODESET] )
Locale::Currency::delete_currency_code_alias ( CODE [,CODESET] )
These routines are all documented in the Locale::Codes::API man page.
SEE ALSO
Locale::Codes
The Locale-Codes distribution.
Locale::Codes::API
The list of functions supported by this module.
http://www.iso.org/iso/support/currency_codes_list-1.htm
The ISO 4217 data.
AUTHOR
See Locale::Codes for full author history.
Currently maintained by Sullivan Beck (sbeck@cpan.org).
COPYRIGHT
Copyright (c) 1997-2001 Canon Research Centre Europe (CRE).
Copyright (c) 2001 Michael Hennecke
Copyright (c) 2001-2010 Neil Bowers
Copyright (c) 2010-2013 Sullivan Beck
This module is free software; you can redistribute it and/or modify it under the same terms as Perl itself.
perl v5.18.2 2013-11-04 Locale::Currency(3pm)