10-24-2019
I'm not sure I understand completly but in
f1 the same
IonCode may appear multiple times. However, the value in
uniq is always unique and the each IonCode above each
uniq unill the newline in
f1 will be found in the
data as a pair. That is in
f1 IonCode_0404 but in
data IonCode_0404.bam and
IonCode_0404.bam.bai. In
f1 IonCode_0402 but in
data IonCode_0402.bam and
IonCode_0402.bam.bai.
Both
IonCode pairs are renamed with the
$2 values from each matching
IonCode above
uniq with
_test after it. Thank you very much
.
Last edited by cmccabe; 10-24-2019 at 06:12 PM..
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UNIQ(1) FSF UNIQ(1)
NAME
uniq - remove duplicate lines from a sorted file
SYNOPSIS
uniq [OPTION]... [INPUT [OUTPUT]]
DESCRIPTION
Discard all but one of successive identical lines from INPUT (or standard input), writing to OUTPUT (or standard output).
Mandatory arguments to long options are mandatory for short options too.
-c, --count
prefix lines by the number of occurrences
-d, --repeated
only print duplicate lines
-D, --all-repeated[=delimit-method] print all duplicate lines
delimit-method={none(default),prepend,separate} Delimiting is done with blank lines.
-f, --skip-fields=N
avoid comparing the first N fields
-i, --ignore-case
ignore differences in case when comparing
-s, --skip-chars=N
avoid comparing the first N characters
-u, --unique
only print unique lines
-w, --check-chars=N
compare no more than N characters in lines
--help display this help and exit
--version
output version information and exit
A field is a run of whitespace, then non-whitespace characters. Fields are skipped before chars.
AUTHOR
Written by Richard Stallman and David MacKenzie.
REPORTING BUGS
Report bugs to <bug-coreutils@gnu.org>.
COPYRIGHT
Copyright (C) 2002 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICU-
LAR PURPOSE.
SEE ALSO
The full documentation for uniq is maintained as a Texinfo manual. If the info and uniq programs are properly installed at your site, the
command
info uniq
should give you access to the complete manual.
uniq (coreutils) 4.5.3 February 2003 UNIQ(1)