10-24-2019
I'm not sure I understand completly but in
f1 the same
IonCode may appear multiple times. However, the value in
uniq is always unique and the each IonCode above each
uniq unill the newline in
f1 will be found in the
data as a pair. That is in
f1 IonCode_0404 but in
data IonCode_0404.bam and
IonCode_0404.bam.bai. In
f1 IonCode_0402 but in
data IonCode_0402.bam and
IonCode_0402.bam.bai.
Both
IonCode pairs are renamed with the
$2 values from each matching
IonCode above
uniq with
_test after it. Thank you very much
.
Last edited by cmccabe; 10-24-2019 at 06:12 PM..
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UNIQ(1) User Commands UNIQ(1)
NAME
uniq - report or omit repeated lines
SYNOPSIS
uniq [OPTION]... [INPUT [OUTPUT]]
DESCRIPTION
Filter adjacent matching lines from INPUT (or standard input), writing to OUTPUT (or standard output).
With no options, matching lines are merged to the first occurrence.
Mandatory arguments to long options are mandatory for short options too.
-c, --count
prefix lines by the number of occurrences
-d, --repeated
only print duplicate lines, one for each group
-D, --all-repeated[=METHOD]
print all duplicate lines groups can be delimited with an empty line METHOD={none(default),prepend,separate}
-f, --skip-fields=N
avoid comparing the first N fields
--group[=METHOD]
show all items, separating groups with an empty line METHOD={separate(default),prepend,append,both}
-i, --ignore-case
ignore differences in case when comparing
-s, --skip-chars=N
avoid comparing the first N characters
-u, --unique
only print unique lines
-z, --zero-terminated
end lines with 0 byte, not newline
-w, --check-chars=N
compare no more than N characters in lines
--help display this help and exit
--version
output version information and exit
A field is a run of blanks (usually spaces and/or TABs), then non-blank characters. Fields are skipped before chars.
Note: 'uniq' does not detect repeated lines unless they are adjacent. You may want to sort the input first, or use 'sort -u' without
'uniq'. Also, comparisons honor the rules specified by 'LC_COLLATE'.
GNU coreutils online help: <http://www.gnu.org/software/coreutils/> Report uniq translation bugs to <http://translationproject.org/team/>
AUTHOR
Written by Richard M. Stallman and David MacKenzie.
COPYRIGHT
Copyright (C) 2013 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html>.
This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law.
SEE ALSO
comm(1), join(1), sort(1)
The full documentation for uniq is maintained as a Texinfo manual. If the info and uniq programs are properly installed at your site, the
command
info coreutils 'uniq invocation'
should give you access to the complete manual.
GNU coreutils 8.22 June 2014 UNIQ(1)