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Top Forums Shell Programming and Scripting Rename file using partial match to another Post 303040192 by cmccabe on Thursday 24th of October 2019 05:01:51 PM
Old 10-24-2019
I'm not sure I understand completly but in f1 the same IonCode may appear multiple times. However, the value in uniq is always unique and the each IonCode above each uniq unill the newline in f1 will be found in the data as a pair. That is in f1 IonCode_0404 but in data IonCode_0404.bam and IonCode_0404.bam.bai. In f1 IonCode_0402 but in data IonCode_0402.bam and IonCode_0402.bam.bai.
Both IonCode pairs are renamed with the $2 values from each matching IonCode above uniq with _test after it. Thank you very much Smilie.

Last edited by cmccabe; 10-24-2019 at 06:12 PM..
 

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UNIQ(1) 							   User Commands							   UNIQ(1)

NAME
uniq - report or omit repeated lines SYNOPSIS
uniq [OPTION]... [INPUT [OUTPUT]] DESCRIPTION
Filter adjacent matching lines from INPUT (or standard input), writing to OUTPUT (or standard output). With no options, matching lines are merged to the first occurrence. Mandatory arguments to long options are mandatory for short options too. -c, --count prefix lines by the number of occurrences -d, --repeated only print duplicate lines, one for each group -D, --all-repeated[=METHOD] print all duplicate lines groups can be delimited with an empty line METHOD={none(default),prepend,separate} -f, --skip-fields=N avoid comparing the first N fields --group[=METHOD] show all items, separating groups with an empty line METHOD={separate(default),prepend,append,both} -i, --ignore-case ignore differences in case when comparing -s, --skip-chars=N avoid comparing the first N characters -u, --unique only print unique lines -z, --zero-terminated end lines with 0 byte, not newline -w, --check-chars=N compare no more than N characters in lines --help display this help and exit --version output version information and exit A field is a run of blanks (usually spaces and/or TABs), then non-blank characters. Fields are skipped before chars. Note: 'uniq' does not detect repeated lines unless they are adjacent. You may want to sort the input first, or use 'sort -u' without 'uniq'. Also, comparisons honor the rules specified by 'LC_COLLATE'. GNU coreutils online help: <http://www.gnu.org/software/coreutils/> Report uniq translation bugs to <http://translationproject.org/team/> AUTHOR
Written by Richard M. Stallman and David MacKenzie. COPYRIGHT
Copyright (C) 2013 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html>. This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. SEE ALSO
comm(1), join(1), sort(1) The full documentation for uniq is maintained as a Texinfo manual. If the info and uniq programs are properly installed at your site, the command info coreutils 'uniq invocation' should give you access to the complete manual. GNU coreutils 8.22 June 2014 UNIQ(1)
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