Looks like the last file in the directory is getting renamed with both matching not the unique. Is another loop needed or all the values on one line instead of separate? Thank you .
11-1111-yy-yy-yyy_test.bam ---- this is IonCode_0402_xxx.xxx_xxx ---
11-1111-yy-yy-yyy_test.bam.bai ---- this is IonCode_0402_xxx.xxx_xxx ---
00-0000-xxx-xxx-xxx_test.bam ---- this is IonCode_0404_xxx.xxx_xxx ---
00-0000-xxx-xxx-xxx_test.bam.bai ---- this is IonCode_0404_xxx.xxx_xxx ---
Last edited by cmccabe; 10-24-2019 at 01:52 PM..
Reason: fixed format
Hi,
I am having file which contains around 15 columns, i need to fetch column 3,12,14 based on the condition that column 3 starts with 40464
this is the sample data
how to achieve that (3 Replies)
I’m trying to modify someone perl script to fix a bug. The piece of code checks that the zone name you want to add is unique. However, when the code runs, it finds a partial match using grep, and decides it already exists, so the “create” command exits.
$cstatus = `${ZADM} list -vic | grep... (3 Replies)
Hi, I was trying to figure this out but failed so I hope someone here can help me, thank you in advance.
I have two files.
file1: aa M
bb N
cc O
dd P
ee Q file2: aa A_87_P254063
cc A_87_P016532
bb A_87_P104793
dd A_87_P055331
ee A_87_P059706
aa A_87_P071636
ee A_87_P028302... (2 Replies)
Hi I have a question and hope I can get answer here. Thank you in advance.
I have two files:
file1:
aa X
bb Y
cc Z
file2:
cc A
bb B
dd C
aa D
bb E
If the 1st column match in both file1 and file2, the 2nd column in file2 will be replaced by the 2nd column in file1. If there is no... (2 Replies)
I posted the incorrect files yesterday and apologize. I also modified the awk script but with no luck. There are two text files in the zip (name.txt and output.txt). I am trying to match $2 in name.txt with $1 in output.txt and if they match then $1 of name.txt is copied to $7 of output.txt. ... (7 Replies)
I have a specific set (all ending with .bam) of downloaded files in a directory /home/cmccabe/Desktop/NGS/API/2-15-2016. What I am trying to do is use a match to $2 in name to rename the downloaded files. To make things a more involved the date of the folder is unique and in the header of name... (1 Reply)
Hi All,
I have 100 folders with the first delimiter has a unique name i.e (123_hello and 575_hello) and each folder have atlist 1000 plus files with naming convention i.e (575_hello_1.iso ... 575_hello_1000.iso).
575_hello/575_hello_1.iso
575_hello/575_hello_2.iso
575_hello/575_hello_3.iso... (8 Replies)
Hi, I have a tab delimited text file like this one. I need to do a partial match of a particular cell and then replace matches with an empty cell. So here is a sample:
Smith FordMustang ChevroletCamaro
Miller FordFiesta
Jones KiaSorrento
Davis ChevroletCamaro
Johnson ToyotaHighlander
I... (4 Replies)
I am trying to create a cronjob that will run on startup that will look at a list.txt file to see if there is a later version of a database using database.txt as the source. The matching lines are written to output.
$1 in database.txt will be in list.txt as a partial match. $2 of database.txt... (2 Replies)
In the portion of bash below I am using rename to match the $id variable to $file and when a match (there will alwsys be one) is found then the $id is removed from each bam and bam.bai in $file and _test is added to thee file name before the extension. Each of the variables is set correctly but... (3 Replies)
Discussion started by: cmccabe
3 Replies
LEARN ABOUT DEBIAN
lurker-search
LURKER-SEARCH(1) General Commands Manual LURKER-SEARCH(1)NAME
lurker-search -- searches for messages in a lurker database
SYNOPSIS
lurker-search [-c <config-file>] [-k <keyword>] [-d -f -i -v -q] [<terms>*]
DESCRIPTION
lurker-search searches a lurker database the same way as the web interface. It can output summary information and delete messages.
OPTIONS -c config-file
Use this config file for lurker settings.
-k keyword
Tag the matching messages with this keyword.
-d Delete the messages found by this search
-f Don't prompt before deleting
-i Command line paramers are not search terms, but message IDs.
-v Output message summary information
-q Don't output message ids or status
SEARCH TERMS
Lurker-search accepts these keywords for searching:
-xxx select messages which do NOT match this term
id:xxx select a message by the Message-ID field
rt:xxx select messages which reply to the chosen Message-ID
th:xxx select messages included in this thread
ml:xxx select messages in this mailing list
gr:xxx select messages in this mailing list group
au:xxx select messages with this term in the author fields
sb:xxx select messages with this word in the subject
lang:xxx select messages in this language
SEE ALSO lurker-index(1), lurker-prune(1), lurker-params(1), lurker-list(1)
lurker documentation on http://lurker.sourceforge.net/
COPYRIGHT
Copyright (C) 2002: Wesley W. Terpstra <terpstra@users.sourceforge.net>
This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by
the Free Software Foundation; version 2.
This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MER-
CHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.
You should have received a copy of the GNU General Public License along with this program; if not, write to the Free Software Foundation,
Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
BUGS
Before reporting a bug, please confirm that the bug you found is still present in the latest official release. If the problem persists,
then send mail with instructions describing how to reproduce the bug to <lurker-users@lists.sourceforge.net>.
LURKER-SEARCH(1)
10-24-2019
.