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Top Forums UNIX for Beginners Questions & Answers Bash to append array value to file before copying Post 303039924 by Corona688 on Thursday 17th of October 2019 01:20:09 PM
Old 10-17-2019
Quote:
Originally Posted by cmccabe
So if I understand and am reading the error correctly the * is not expanding on the remote machine? I think this because tee looks good but the terminal doesn't like the *. I am testing this on ubuntu but will use it on centos. Thank you Smilie.
No reason * shouldn't expand, perhaps you ended up with nonprinting characters like carriage returns in your array or some such. If the commands work when pasted, that's what I'd bet.

By the way, you don't need readarray to make arrays:
Code:
# Set an array in one step in bash
array=( $(awk -F '\n' -v RS="" -v ref="$s5" '$0 ~ ref {d=split($0, val, " "); for(i=2;i<d;i+=2) printf "%s ",val[i]; printf "\n"}' list | tr -d '\r') )

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Bio::Biblio::MedlineArticle(3pm)			User Contributed Perl Documentation			  Bio::Biblio::MedlineArticle(3pm)

NAME
Bio::Biblio::MedlineArticle - Representation of a MEDLINE article SYNOPSIS
$obj = Bio::Biblio::MedlineArticle->new(-mesh_headings => #array ref of hashes ); # how are Mesh terms stored: use Data::Dumper; print Data::Dumper->Dump ( [$obj->mesh_headings], ['MeshHeadings']); #It produces (something like) this: #'MeshHeadings' => [ # { 'descriptorName' => 'Adult' }, # { 'descriptorName' => 'Cardiovascular Diseases', # 'subHeadings' => [ { 'subHeading' => 'etiology' }, # { 'majorTopic' => 'Y', # 'subHeading' => 'mortality' } ] }, # { 'descriptorName' => 'Child Development', # 'subHeadings' => [ { 'majorTopic' => 'Y', # 'subHeading' => 'physiology' } ] }, # { 'descriptorName' => 'Human' }, # ] DESCRIPTION
A storage object for a MEDLINE article. See its place in the class hierarchy in http://www.ebi.ac.uk/~senger/openbqs/images/bibobjects_perl.gif Attributes The following attributes are specific to this class (however, you can also set and get all attributes defined in the parent classes): affiliation chemicals type: array ref of hashes citation_owner comment_ins type: array ref of hashes comment_ons type: array ref of hashes date_of_electronic_publication erratum_fors type: array ref of hashes erratum_in type: array ref of hashes gene_symbols general_notes type: array ref of hashes grant_list_complete grants type: array ref of hashes medline_date medline_id medline_page mesh_headings type: array ref of hashes number_of_references original_report_ins type: array ref of hashes other_abstracts type: array ref of hashes other_ids type: array ref of hashes other_languages pmid republished_froms type: array ref of hashes republished_ins type: array ref of hashes retraction_ins type: array ref of hashes retraction_ofs type: array ref of hashes season status summary_for_patients_ins type: array ref of hashes update_ins type: array ref of hashes update_ofs type: array ref of hashes vernacular_title SEE ALSO
o OpenBQS home page: http://www.ebi.ac.uk/~senger/openbqs/ o Comments to the Perl client: http://www.ebi.ac.uk/~senger/openbqs/Client_perl.html FEEDBACK
Mailing Lists User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated. bioperl-l@bioperl.org - General discussion http://bioperl.org/wiki/Mailing_lists - About the mailing lists Support Please direct usage questions or support issues to the mailing list: bioperl-l@bioperl.org rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible. Reporting Bugs Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web: https://redmine.open-bio.org/projects/bioperl/ AUTHORS
Heikki Lehvaslaiho (heikki-at-bioperl-dot-org), Martin Senger (senger@ebi.ac.uk) COPYRIGHT
Copyright (c) 2002 European Bioinformatics Institute. All Rights Reserved. This module is free software; you can redistribute it and/or modify it under the same terms as Perl itself. DISCLAIMER
This software is provided "as is" without warranty of any kind. perl v5.14.2 2012-03-02 Bio::Biblio::MedlineArticle(3pm)
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