I tried it two ways both resulting in file or directory not found, but I can manually ssh to them. This is not the full code but I hope it's enough as I don't want to post code that is not needed. Thank you .
attempt 1
Code:
# match unique run in list and extract samples
run=$(awk -F '\n' -v RS="" -v ref="$s5" '$0 ~ ref {d=split($0, val, " "); for(i=2;i<d;i+=2) printf "%s ",val[i]; printf "\n"}' list)
# create array of samples from $run
readarray -t array <<< "$(printf '%s\n' $run)"
for ((i=0; i<${#array[@]}; i++ )) ; do
echo "${array[$i]}"
done
# loop through array and append with ID
for ID in "${array[@]}" ; do
"( cd /path/to/${ID}*/*/folder && exec sshpass -f file.txt scp xxx@xxx.xx.xx.xxx:path/to/destination/${ID}-cn_results.png )"
done | sshpass -f out.txt ssh -o strictHostKeyChecking=no -t xxxx@xxx.xx.xxx.xx
attempt 2
Code:
# match unique run in list and extract samples
run=$(awk -F '\n' -v RS="" -v ref="$s5" '$0 ~ ref {d=split($0, val, " "); for(i=2;i<d;i+=2) printf "%s ",val[i]; printf "\n"}' list)
# create array of samples from $run
readarray -t array <<< "$(printf '%s\n' $run)"
for ((i=0; i<${#array[@]}; i++ )) ; do
echo "${array[$i]}"
done
# loop through array and append with ID
for ID in "${array[@]}" ; do
"( cd /path/to/${ID}*/*/folder && exec sshpass -f file.txt scp "$ID" xxx@xxx.xx.xx.xxx:path/to/destination/"${ID%}"-cn_results.png )"
done | sshpass -f out.txt ssh -o strictHostKeyChecking=no -t xxxx@xxx.xx.xxx.xx
attempt 1 error:
Code:
script.sh: line 39: ( cd /path/to/ID1*/*/folder && exec sshpass -f file.txt scp -- *.png* xxx@xxx.xx.xx.xxx:path/to/destination/ID1-cn_results.png ): No such file or directory
script.sh: line 39: ( cd /path/to/ID2*/*/folder && exec sshpass -f file.txt scp -- *.png* xxx@xxx.xx.xx.xxx:path/to/destination/ID2-cn_results.png ): No such file or directory
attempt 2 error: --- in the server these exsist as ID1-xxxx-xxxxxxx-xxxxxx so I added * but thats not expanding it seems ----
Code:
ID1: No such file or directory
ID2: No such file or directory
Last edited by cmccabe; 10-16-2019 at 01:40 PM..
Reason: fixed format
Hi,
I'm trying to write a function that redirects the contents of an
array to a file. The array contains the lines of a data file with
white space.
The function seems to preserve all white space when redirected
except that it seems to ignore newlines. As a consequence, the
elements of the... (7 Replies)
Hi Guys,
I have a file which has numbers in it separated by newlines as follows:
1.113
1.456
0.556
0.021
-0.541
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I am using the following code to store these in an array in bash:
FILE14=data.txt
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"file.a.b.1-C.r"
"file.a.b.1-D.r"
where the field "c-d" changes into my 1 and A-D.
I was doing this manually at the prompt with
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Hi,
I'm trying to write a bash script that takes a file and passes each line from the file into an array with elements separated by column.
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for a in {1..100}
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Hi Team,
i have a web ui where user will be passing values and the output will be saved to a file say test with the following contents .
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Gateway... (7 Replies)
Hi guys and gals...
MacBook Pro.
OSX 10.13.2, default bash terminal.
I have a flat file 1920 bytes in size of whitespaces only. I need to put every single whitespace character into a bash array cell.
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Discussion started by: wisecracker
7 Replies
LEARN ABOUT CENTOS
git-send-pack
GIT-SEND-PACK(1) Git Manual GIT-SEND-PACK(1)NAME
git-send-pack - Push objects over Git protocol to another repository
SYNOPSIS
git send-pack [--all] [--dry-run] [--force] [--receive-pack=<git-receive-pack>] [--verbose] [--thin] [<host>:]<directory> [<ref>...]
DESCRIPTION
Usually you would want to use git push, which is a higher-level wrapper of this command, instead. See git-push(1).
Invokes git-receive-pack on a possibly remote repository, and updates it from the current repository, sending named refs.
OPTIONS
--receive-pack=<git-receive-pack>
Path to the git-receive-pack program on the remote end. Sometimes useful when pushing to a remote repository over ssh, and you do not
have the program in a directory on the default $PATH.
--exec=<git-receive-pack>
Same as --receive-pack=<git-receive-pack>.
--all
Instead of explicitly specifying which refs to update, update all heads that locally exist.
--dry-run
Do everything except actually send the updates.
--force
Usually, the command refuses to update a remote ref that is not an ancestor of the local ref used to overwrite it. This flag disables
the check. What this means is that the remote repository can lose commits; use it with care.
--verbose
Run verbosely.
--thin
Send a "thin" pack, which records objects in deltified form based on objects not included in the pack to reduce network traffic.
<host>
A remote host to house the repository. When this part is specified, git-receive-pack is invoked via ssh.
<directory>
The repository to update.
<ref>...
The remote refs to update.
SPECIFYING THE REFS
There are three ways to specify which refs to update on the remote end.
With --all flag, all refs that exist locally are transferred to the remote side. You cannot specify any <ref> if you use this flag.
Without --all and without any <ref>, the heads that exist both on the local side and on the remote side are updated.
When one or more <ref> are specified explicitly, it can be either a single pattern, or a pair of such pattern separated by a colon ":"
(this means that a ref name cannot have a colon in it). A single pattern <name> is just a shorthand for <name>:<name>.
Each pattern pair consists of the source side (before the colon) and the destination side (after the colon). The ref to be pushed is
determined by finding a match that matches the source side, and where it is pushed is determined by using the destination side. The rules
used to match a ref are the same rules used by git rev-parse to resolve a symbolic ref name. See git-rev-parse(1).
o It is an error if <src> does not match exactly one of the local refs.
o It is an error if <dst> matches more than one remote refs.
o If <dst> does not match any remote ref, either
o it has to start with "refs/"; <dst> is used as the destination literally in this case.
o <src> == <dst> and the ref that matched the <src> must not exist in the set of remote refs; the ref matched <src> locally is used
as the name of the destination.
Without --force, the <src> ref is stored at the remote only if <dst> does not exist, or <dst> is a proper subset (i.e. an ancestor) of
<src>. This check, known as "fast-forward check", is performed in order to avoid accidentally overwriting the remote ref and lose other
peoples' commits from there.
With --force, the fast-forward check is disabled for all refs.
Optionally, a <ref> parameter can be prefixed with a plus + sign to disable the fast-forward check only on that ref.
GIT
Part of the git(1) suite
Git 1.8.3.1 06/10/2014 GIT-SEND-PACK(1)
10-16-2019
.