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Top Forums UNIX for Beginners Questions & Answers Find lines with duplicate values in a particular column Post 303039634 by kaktus on Thursday 10th of October 2019 06:34:15 PM
Old 10-10-2019
Find lines with duplicate values in a particular column

I have a file with 5 columns. I want to pull out all records where the value in column 4 is not unique. For example in the sample below, I would want it to print out all lines except for the last two.

Code:
40991764	2419	724	47182	Cand A
40992936	3591	724	47182	Cand B
40993016	3671	724	47182	Cand C
40993876	4531	724	10154	Strep A
40993878	4533	724	10154	Strep B
40993990	4645	724	58899	Cala A
40993991	4646	724	63849	Myco A

I tried this:
Code:
awk -F '\t' 'a=x[$4]{print a"\n"$0;} {x[$4]=$0;}'

It works well if there is only one duplicate per line (10154 above), but if there is more than 1 duplicate (47182 above), it prints out one of the matched duplicates twice (Cand B):

Code:
40991764	2419	724	47182	Cand A
40992936	3591	724	47182	Cand B
40992936	3591	724	47182	Cand B
40993016	3671	724	47182	Cand C
40993876	4531	724	10154	Strep A
40993878	4533	724	10154	Strep B

How can I get it to print each unique line only once?
 

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Devel::Refcount(3pm)					User Contributed Perl Documentation				      Devel::Refcount(3pm)

NAME
"Devel::Refcount" - obtain the REFCNT value of a referent SYNOPSIS
use Devel::Refcount qw( refcount ); my $anon = []; print "Anon ARRAY $anon has " . refcount($anon) . " reference "; my $otherref = $anon; print "Anon ARRAY $anon now has " . refcount($anon) . " references "; DESCRIPTION
This module provides a single function which obtains the reference count of the object being pointed to by the passed reference value. FUNCTIONS
$count = refcount($ref) Returns the reference count of the object being pointed to by $ref. COMPARISON WITH SvREFCNT This function differs from "Devel::Peek::SvREFCNT" in that SvREFCNT() gives the reference count of the SV object itself that it is passed, whereas refcount() gives the count of the object being pointed to. This allows it to give the count of any referent (i.e. ARRAY, HASH, CODE, GLOB and Regexp types) as well. Consider the following example program: use Devel::Peek qw( SvREFCNT ); use Devel::Refcount qw( refcount ); sub printcount { my $name = shift; printf "%30s has SvREFCNT=%d, refcount=%d ", $name, SvREFCNT($_[0]), refcount($_[0]); } my $var = []; printcount 'Initially, $var', $var; my $othervar = $var; printcount 'Before CODE ref, $var', $var; printcount '$othervar', $othervar; my $code = sub { undef $var }; printcount 'After CODE ref, $var', $var; printcount '$othervar', $othervar; This produces the output Initially, $var has SvREFCNT=1, refcount=1 Before CODE ref, $var has SvREFCNT=1, refcount=2 $othervar has SvREFCNT=1, refcount=2 After CODE ref, $var has SvREFCNT=2, refcount=2 $othervar has SvREFCNT=1, refcount=2 Here, we see that SvREFCNT() counts the number of references to the SV object passed in as the scalar value - the $var or $othervar respectively, whereas refcount() counts the number of reference values that point to the referent object - the anonymous ARRAY in this case. Before the CODE reference is constructed, both $var and $othervar have SvREFCNT() of 1, as they exist only in the current lexical pad. The anonymous ARRAY has a refcount() of 2, because both $var and $othervar store a reference to it. After the CODE reference is constructed, the $var variable now has an SvREFCNT() of 2, because it also appears in the lexical pad for the new anonymous CODE block. PURE-PERL FALLBACK An XS implementation of this function is provided, and is used by default. If the XS library cannot be loaded, a fallback implementation in pure perl using the "B" module is used instead. This will behave identically, but is much slower. Rate pp xs pp 225985/s -- -66% xs 669570/s 196% -- SEE ALSO
o Test::Refcount - assert reference counts on objects AUTHOR
Paul Evans <leonerd@leonerd.org.uk> perl v5.14.2 2011-11-15 Devel::Refcount(3pm)
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