Probably missing an obvious syntax error but another set of eyes will help. Thank you .
Code:
DIR=/home/cmccabe/Desktop/new
for RDIR in "$DIR"/R_2019* ; do ## # matching "R_2019*" to operate on desired directory and expand
S5=${RDIR##*/} ## store run with no path as S5
TRIMSTR=${RDIR%%-v5.6*} ## trim folder match in RDIR from -v5.6 and store in TRIMSTR
mv "$RDIR" "$TRIMSTR" ## move trimmed folder to directory
cd "$TRIMSTR"
STRING=$(awk -F '\n' -v RS="" -v ref="$S5" '$0 ~ ref {d=split($0, val, " "); for(i=2;i<d;i+=2) printf "%s ",val[i]; printf "\n"}' "$DIR"/f1)
for folder in *[0-9]*/ ; do
folder=${folder%/} ## remove trailing slash
if ! [[ " ${STRING/[*]} " == *\ $folder\ * ]]
then
for folder in $STRING ; do
## if $folder does not exist then make
[ -d "$folder" ]
mkdir -p "$TRIMSTR"/"$folder"/variants
break
end
fi
done
done
done
Code:
bash: syntax error near unexpected token `fi'
cmccabe@xxx:~$ done
bash: syntax error near unexpected token `done'
cmccabe@xxx:~$ done
bash: syntax error near unexpected token `done'
cmccabe@xxx:~$ done
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Discussion started by: cmccabe
2 Replies
LEARN ABOUT DEBIAN
rfio_opendir
RFIO_OPENDIR(3) Rfio Library Functions RFIO_OPENDIR(3)NAME
rfio_opendir - open a directory
SYNOPSIS
#include <sys/types.h>
#include "rfio_api.h"
RDIR *rfio_opendir (const char *path);
DESCRIPTION
rfio_opendir opens a directory to be used in subsequent rfio_readdir operations. A RDIR structure and a buffer to cache the directory
entries are allocated in the client API.
path specifies the logical pathname relative to the current directory or the full pathname.
NOTES
For LCG directories, a multi-threaded application will need to initialize itself the Cthread (LCG Thread Interface) library ; this is done
by including "shift/Cthread_api.h" and calling the function Cthread_init() at the beginning. Otherwise accessing LCG directories will not
be thread-safe. See Cthread(3).
RETURN VALUE
This routine returns a pointer to be used in the subsequent directory function calls if the operation was successful or NULL if the opera-
tion failed. In the latter case, serrno is set appropriately.
ERRORS
ENOENT A component of path prefix does not exist or path is a null pathname.
EACCES Search permission is denied on a component of the path prefix or read permission is denied on path.
EFAULT path is a NULL pointer.
ENOTDIR A component of path prefix is not a directory.
ENAMETOOLONG The length of path exceeds CA_MAXPATHLEN or the length of a path component exceeds CA_MAXNAMELEN.
SENOSHOST Host unknown.
SENOSSERV Service unknown.
SECOMERR Communication error.
SEE ALSO Castor_limits(4), rfio_closedir(3), rfio_readdir(3), rfio_rewinddir(3)AUTHOR
LCG Grid Deployment Team
LCG $Date: 2005/03/31 13:13:03 $ RFIO_OPENDIR(3)
10-08-2019
.