I made some edits to the code and am closer but am not performing the $STRING to $folder comparison correctly and the wrong folder gets created. I don't know if there is a better way but hopefullt I am closer Thank you .
Code:
DIR=/home/cmccbe/folder
for RDIR in "$DIR"/R_2019* ; do ## # matching "R_2019*" to operate on desired directory and expand
S5=${RDIR##*/} ## store run with no path as S5
TRIMSTR=${RDIR%%-v5.6*} ## trim folder match in RDIR from -v5.6 and store in TRIMSTR
mv "$RDIR" "$TRIMSTR" ## move trimmed folder to directory
cd "$TRIMSTR"
folders=`ls -d *[0-9]*/` ## list folders
STRING=$(awk -F '\n' -v RS="" -v ref="$S5" '$0 ~ ref {print $2}' "$DIR"/f1)
if [[ $folders == $STRING* ]] ## only execute folder on match
then
continue
if [[ $folders != $STRING* ]] ## only execute folder on mis-match
then
mkdir -p "$TRIMSTR"/variants
fi
fi
done
I made some edits to the code and am closer but am not performing the $STRING to $folder comparison correctly and the wrong folder gets created. Thank you .
Code:
DIR=/home/cmccbe/folder
for RDIR in "$DIR"/R_2019* ; do ## # matching "R_2019*" to operate on desired directory and expand
S5=${RDIR##*/} ## store run with no path as S5
TRIMSTR=${RDIR%%-v5.6*} ## trim folder match in RDIR from -v5.6 and store in TRIMSTR
mv "$RDIR" "$TRIMSTR" ## move trimmed folder to directory
cd "$TRIMSTR"
folders=`ls -d *[0-9]*/` ## list folders
STRING=$(awk -F '\n' -v RS="" -v ref="$S5" '$0 ~ ref {print $2}' "$DIR"/f1)
if [[ $folders != $STRING* ]] ## only execute folder on mis-match
then
mkdir -p "$TRIMSTR"/$STRING/folder
fi
done
DIR=/home/cmccabe/Desktop/new --- define directory ---
for RDIR in "$DIR"/R_2019* ; do --- /home/cmccabe/Desktop/new/R_2019_00_00_00_00_00_xxxx_x0-00000-123-v5.6_xxx_xxx_xxx_xxx_xxx_xxx_xxxx ---
S5=${RDIR##*/} --- R_2019_00_00_00_00_00_xxxx_x0-00000-123-v5.6_xxx_xxx_xxx_xxx_xxx_xxx_xxxx ---
TRIMSTR=${RDIR%%-v5.6*} --- --- R_2019_00_00_00_00_00_xxxx_x0-00000-123 ---
mv "$RDIR" "$TRIMSTR" --- /home/cmccabe/Desktop/new/R_2019_00_00_00_00_00_xxxx_x0-00000-123-v5.6_xxx_xxx_xxx_xxx_xxx_xxx_xxxx >>> /home/cmccabe/Desktop/new/R_2019_00_00_00_00_00_xxxx_x0-00000-123-v5.6
cd "$TRIMSTR" --- look in /home/cmccabe/Desktop/new/R_2019_00_00_00_00_00_xxxx_x0-00000-123-v5.6 ---
folders=`ls -d *[0-9]*/` --- 00-1111-xxx-xxx/ 00-2222-yyy-yy/ ---
STRING=$(awk -F '\n' -v RS="" -v ref="$S5" '$0 ~ ref {print $2}' "$DIR"/f1) --- match R_2019 from $S5 line in f1 and print 00-1111-xxx-xxx/ 00-2222-yyy-yy 00-3333-zz-zz to $STRING --
if [[ $folders == $STRING/* ]] ## only folder on match --- 00-1111-xxx-xxx/ 00-2222-yyy-yy are skipped as they match $STRING ---
then
continue
if [[ $folders != $STRING/* ]] ## only execute folder on mis-match --- 00-3333-zz-zz is not equal to $STRING ---
then
mkdir -p "$TRIMSTR"/variants --- 00-3333-zz-zz/variants is made in /home/cmccabe/Desktop/new/R_2019_00_00_00_00_00_xxxx_x0-00000-123-v5.6 ---
fi
fi
done
Last edited by cmccabe; 10-02-2019 at 05:10 PM..
Reason: fixed format, updated awk, added thought process
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