Process only 4 digit odd number starting with zero
I am trying to process only IonCode_odd #'s (always 4 digits starting with zero), but the below isn't working as expected. Is there a better way? Thank you .
Hi,
Was wondering if you could give me an example of extracting a 10 digit number from 5 txt files using a regular expression (the number is always different ) and storing the numbers in variables
Thanks
C19 (9 Replies)
i am new to shell scripting. i want to keep on increamenting a 6 digit number. For eg. 000000 + 1 = 000001 But instead of 000001 i get only 1. How do i do this ? Pls help. (8 Replies)
Hey all, I need to launch a script from within 2 other scripts that can run independently of the two parent scripts... Im having a hard time doing this, if anyone knows how please let me know.
More detail.
ScriptA (bash), ScriptB (ksh), ScriptC (bash)
ScriptA, launches ScriptB
ScirptB,... (7 Replies)
I have to write a c program which takes a 3 digit number n and calculates the value of (2^n)+1 and then determines the number is prime or not.
I have tried to first calculate the value of 2^n and then adding one to it and then apply the logic of prime number.
but the ultimate problem is that... (7 Replies)
how can i list all files in my home directory that have a 4 digit id number, the line number where the id is located and the id itself not printing the entire line? (5 Replies)
Hi,
If I want to separate data set to new file by odd and even number.
If data set like this
1 ABC 235 hgf
2 DEF 326 kjk
3 XXX 133 kwd
4 YYY 188 fgh
If I want separate by colum3
I want result like
set 1
1 ABC 235 hgf
3 XXX 133 kwd
put to new... (3 Replies)
Hi,
I would like to add a suffix to a file name but maintain the suffix length to 5 digits.
For eg,
output > 1st_file.00001, 2nd_file.00002...10th_file.00010....100th_file.00100
Can anyone please advise me on how to go about it?
Platform: SunOS mps201a 5.9 Generic_118558-39 sun4u... (7 Replies)
Hello Team,
i have a file test1.txt, in which i have to grep only the 6 digit number from it,
Could you pls help in this.
$cat test1.txt
<description>R_XYZ_1.6 r370956</description>
$ grep "\{6\}" test1.txt
<description>R_XYZ_1.6 r370956</description>
i need output as 370956.
... (3 Replies)
Dear All,
Lets say I have a number with following format:
####.12e-##
now I want to compare place holder in position 1 and 2.
How can I do that?
Note: My number is stored in a variable say var.
example:
var=9999.12e-05
Thanks & Regards,
linuxUser_ (6 Replies)
Discussion started by: linuxUser_
6 Replies
LEARN ABOUT DEBIAN
bio::index::fastq
Bio::Index::Fastq(3pm) User Contributed Perl Documentation Bio::Index::Fastq(3pm)NAME
Bio::Index::Fastq - Interface for indexing (multiple) fastq files
SYNOPSIS
# Complete code for making an index for several
# fastq files
use Bio::Index::Fastq;
use strict;
my $Index_File_Name = shift;
my $inx = Bio::Index::Fastq->new(
'-filename' => $Index_File_Name,
'-write_flag' => 1);
$inx->make_index(@ARGV);
# Print out several sequences present in the index
# in Fastq format
use Bio::Index::Fastq;
use strict;
my $Index_File_Name = shift;
my $inx = Bio::Index::Fastq->new('-filename' => $Index_File_Name);
my $out = Bio::SeqIO->new('-format' => 'Fastq','-fh' => *STDOUT);
foreach my $id (@ARGV) {
my $seq = $inx->fetch($id); # Returns Bio::Seq::Quality object
$out->write_seq($seq);
}
# or, alternatively
my $id;
my $seq = $inx->get_Seq_by_id($id); #identical to fetch
DESCRIPTION
Inherits functions for managing dbm files from Bio::Index::Abstract.pm, and provides the basic funtionallity for indexing fastq files, and
retrieving the sequence from them. Note: for best results 'use strict'.
Bio::Index::Fastq supports the Bio::DB::BioSeqI interface, meaning it can be used as a Sequence database for other parts of bioperl
FEED_BACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to one
of the Bioperl mailing lists. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
it. Please include a thorough description of the problem with code and data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug reports can be submitted via the
web:
https://redmine.open-bio.org/projects/bioperl/
AUTHOR - Tony Cox
Email - avc@sanger.ac.uk
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
_file_format
Title : _file_format
Function: The file format for this package, which is needed
by the SeqIO system when reading the sequence.
Returns : 'Fastq'
_index_file
Title : _index_file
Usage : $index->_index_file( $file_name, $i )
Function: Specialist function to index FASTQ format files.
Is provided with a filename and an integer
by make_index in its SUPER class.
Example :
Returns :
Args :
id_parser
Title : id_parser
Usage : $index->id_parser( CODE )
Function: Stores or returns the code used by record_id to
parse the ID for record from a string. Useful
for (for instance) specifying a different
parser for different flavours of FASTQ file.
Returns &default_id_parser (see below) if not
set. If you supply your own id_parser
subroutine, then it should expect a fastq
description line. An entry will be added to
the index for each string in the list returned.
Example : $index->id_parser( &my_id_parser )
Returns : ref to CODE if called without arguments
Args : CODE
default_id_parser
Title : default_id_parser
Usage : $id = default_id_parser( $header )
Function: The default Fastq ID parser for Fastq.pm
Returns $1 from applying the regexp /^>s*(S+)/
to $header.
Returns : ID string
Args : a fastq header line string
perl v5.14.2 2012-03-02 Bio::Index::Fastq(3pm)