Hi,
On a similar subject, the following. I have two files:
file1.txt
dbSNP_rsID,Chromosome,Position,Gene
rs10399749,chr. 01,45162,?
rs4030303,chr. 01,72434,?
rs4030300,chr. 01,72515,?
rs940550,chr. 01,78032,?
rs13328714,chr. 01,81468,?
rs11490937,chr. 01,222077,?
rs6683466,chr.... (5 Replies)
Dear Forum,
Full title of the topic would be: "Join 3 or more files using matching column without full list in any of these columns"
I have several, typically 3 or 4 files which I need to join, something like FULL JOIN in slq scripts, all combinations of matches should be printed into an... (3 Replies)
i have a file named keyword.csv(contains around 8k records) which contains a no. of columns.
The 5th column contains all the keywords.
I want to recursively search these keywords in all .pl files(around 1k) and display the filename....Afterthat i will use the filename and some of the column from... (3 Replies)
Hi,
Please excuse for often requesting queries and making R&D, I am trying to work out a possibility where i have two files field separated by pipe and another file containing only one field where there is no matching columns, Could you please advise how to merge two files.
$more... (3 Replies)
I have 2 files. File 1 has more columns (6 columns but the last column has spaces) than file 2 (file 2 has 4 columns). The entries in file 1 do not change but column 4 in file 2 can be different from the the entry in file 1. I want to create a script that reads in file 1 and then uses column 1 2... (5 Replies)
Hi all
I have a great challenge that I am not able to resolve.
Briefly, I have a file like this:
ID_1 chr1 100 -
ID_2 chr2 300 +
and another file like this:
name_1 chr1 150 no -
name_2 chr1 250 yes -
name_3 chr2 350 yes +
name_4 chr2 280 yes +
Well, for each entry in file1 I would... (2 Replies)
Hi,
I hope somebody can help me with this problem, since I would like to solve this problem using awk, but im not experienced enough with this.
I have two files which i want to match, and output the matching column name and row number.
One file contains 4 columns like this:
FILE1:
a ... (6 Replies)
there can be n number of columns but the number of columns and header name will remain same in all 3 files. Files are tab Delimited.
a.txt
Name 9/1 9/2
X 1 7
y 2 8
z 3 9
a 4 10
b 5 11
c 6 12
b.xt
Name 9/1 9/2
X 13 19
y 14 20
z 15 21
a 16 22
b 17 23
c 18 24 c.txt
Name 9/1 9/2... (14 Replies)
First I'd like to apologize if I opened a thread which is already open somewhere.
I did a bit of searching but could quite find what I was looking for, so I will try to explaing what I need.
I'm writing a script on our server, got to a point where I have two files with results. Example:
File1... (6 Replies)
I have 3 files. Each of those files have the same number of records, however certain records have different values. I would like to grep the field in ALL 3 files and display the output with only the differences in column wise and if possible line number
File1
Name = Joe
Age = 33... (3 Replies)
Discussion started by: sidnow
3 Replies
LEARN ABOUT OSF1
comm
comm(1) General Commands Manual comm(1)NAME
comm - Compares two sorted files.
SYNOPSIS
comm [-123] file1 file2
STANDARDS
Interfaces documented on this reference page conform to industry standards as follows:
command: XCU5.0
Refer to the standards(5) reference page for more information about industry standards and associated tags.
OPTIONS
Suppresses output of the first column (lines in file1 only). Suppresses output of the second column (lines in file2 only). Suppresses
output of the third column (lines common to file1 and file2).
The command comm -123 produces no output.
OPERANDS
A pathname of the first file to be compared. If file1 is a hyphen (-), the standard input is used. A pathname of the second file to be
compared. If file2 is a hyphen (-), the standard input is used.
If both file1 and file2 refer to standard input or to the same FIFO special, block special or character special file, the results are unde-
fined.
DESCRIPTION
The comm command reads file1 and file2 and writes three columns to standard output, showing which lines are common to the files and which
are unique to each.
The leftmost column of standard output includes lines that are in file1 only. The middle column includes lines that are in file2 only.
The rightmost column includes lines that are in both file1 and file2.
If you specify a hyphen (-) in place of one of the file names, comm reads standard input.
Generally, file1 and file2 should be sorted according to the collating sequence specified by the LC_COLLATE environment variable. (See
sort(1).) If the input files are not sorted properly, the output of comm might not be useful.
EXIT STATUS
Successful completion. Error occurred.
EXAMPLES
In the following examples, file1 contains the following sorted list of North American cities:
Anaheim Baltimore Boston Chicago Cleveland Dallas Detroit Kansas City Milwaukee Minneapolis New York Oakland Seattle Toronto
The second file, file2, contains this sorted list:
Atlanta Chicago Cincinnati Houston Los Angeles Montreal New York Philadelphia Pittsburgh San Diego San Francisco St. Louis
To display the lines unique to each file and common to the two files, enter: comm file1 file2
This command results in the following output: Anaheim Atlanta Baltimore Boston Chicago Cincinnati Cleveland Dal-
las Detroit Houston Kansas City Los Angeles Milwaukee Minneapolis Montreal New York Oakland Philadel-
phia Pittsburgh San Diego San Francisco Seattle St. Louis Toronto
The leftmost column contains lines in file1 only, the middle column contains lines in file2 only, and the rightmost column contains
lines common to both files. To display any one or two of the three output columns, include the appropriate flags to suppress the
columns you do not want. For example, the following command displays columns 1 and 2 only: comm -3 file1 file2
Anaheim
Atlanta Baltimore Boston
Cincinnati Cleveland Dallas Detroit
Houston Kansas City
Los Angeles Milwaukee Minneapolis
Montreal Oakland
Philadelphia
Pittsburgh
San Diego
San Francisco Seattle
St. Louis Toronto
The following command displays output from only the second column: comm -13 file1 file2
Atlanta Cincinnati Houston Los Angeles Montreal Philadelphia Pittsburgh San Diego San Francisco St. Louis
The following command displays output from only the third column: comm -12 file1 file2
Chicago New York
SEE ALSO
Commands: cmp(1), diff(1), sdiff(1), sort(1), uniq(1)comm(1)