#!/bin/sh
# read from f1, print in this order
while read f1line
do
# read from f2, find matches => print
while IFS="," read f2col1 f2othercols
do
case $f1line in
("$f2col1"*)
echo "$f1line,$f2col1,$f2othercols"
esac
done < file2.txt
done < file1.txt
The same idea in awk (file2 is read into an array variable first):
Code:
#!/bin/sh
awk -F"," '
{
if (NR==FNR) {
# read from f2 into associative array col1[]
col1[$1]=($2 FS $3)
} else {
# read from f1, find matches => print
for (c in col1)
if (c == substr($0,1,length(c)))
print $0 FS c FS col1[c]
}
}
' file2.txt file1.txt
In awk your propsed way can be implemented with no big overhead:
Code:
#!/bin/sh
awk -F"," '
{
if (NR==FNR) {
# read from f2 into associative array col1[]
col1[$1]=($2 FS $3)
} else {
# read from f1, find matches => print
for (i=length; i>=1; i--)
if ((c=substr($0,1,i)) in col1)
print $0 FS c FS col1[c]
}
}
' file2.txt file1.txt
Hi all,
I have a text file and I want to clean up the file by only print those lines start with the date. Is there anyway I can do that?
Thanks
CT (1 Reply)
Hi,
Please let me know how to find text and print text and its previous line. Please don't get irritated few days back I asked text and next line. I am using HP-UX 11.11
Thanks for your help. (6 Replies)
I am attempting to insert multiple lines of text into a specific place in a text file based on the lines above or below it.
For example, Here is a portion of a zone file.
IN NS ns1.domain.tld.
IN NS ns2.domain.tld.
IN ... (2 Replies)
Hi,
I am trying to extract lines from a text file given a text file containing line numbers to be extracted from the first file. How do I go about doing this? Thanks! (1 Reply)
I have 2 TXT files with with 8 columns in them(tab separated). First file has 2000 entries whereas 2nd file has 300 entries.
The first file has ALL the lines of second file. Now I need to remove those 300 lines (which are in both files) from first file so that first file's line count become... (2 Replies)
I dont even have a sample script cause I dont know where to start from. My data lookes like this
> sat#16 #data: 15 site:UNZA baseline: 205.9151
0.008 -165.2465 35.8109 40.6685 21.9148 121.1446 26.4629 -18.4976 33.8722
0.017 -165.2243 48.2201 40.6908 ... (8 Replies)
I'm trying to pull an image source url from a html source file. I'm new with regex. I'm in BaSH. I've tried grep -E 'http.*jpg' file which highlights the text, but gives me 2 problems:
1) Results aren't stand alone and can't be piped to another command. (I believe it includes everything in... (5 Replies)
I hope this makes sense and is possible.
I am trying to match $1 of panel_genes.txt with $3 of RefSeqGene.txt and when a match is found the value in $6 of RefSeqGene.txt
Example: ACTA2 is $1 of panel_genes.txt
ACTA2 NM_001613.2
ACTA2 NM_001141945.1
awk 'FNR==NR {... (4 Replies)
I am trying to remove each line in which $2 is FP or RFP. I believe the below will remove one instance but not both. Thank you :).
file
12
123 FP
11
10 RFP
awk
awk -F'\t' '
$2 != "FP"' file
desired output
12
11 (6 Replies)
In the below file I am trying to grep or similar, all lines where only AF= is less than 0.4.. Thank you :).
grep
grep "AF=" ,+ .4 file
file
12 112036782 . T C 34.0248 PASS ... (3 Replies)
Discussion started by: cmccabe
3 Replies
LEARN ABOUT DEBIAN
h5diff
h5diff(1) General Commands Manual h5diff(1)NAME
h5diff - Compares two HDF5 files and reports the differences.
SYNOPSIS
h5diff file1 file2 [OPTIONS] [object1 [object2 ] ]
DESCRIPTION
h5diff is a command line tool that compares two HDF5 files, file1 and file2, and reports the differences between them.
Optionally, h5diff will compare two objects within these files. If only one object, object1, is specified, h5diff will compare object1 in
file1 with object1 in file2. In two objects, object1 and object2, are specified, h5diff will compare object1 in file1 with object2 in
file2. These objects must be HDF5 datasets.
object1 and object2 must be expressed as absolute paths from the respective file's root group.
Additional information, with several sample cases, can be found in the document H5diff Examples.
OPTIONS
file1 file2
The HDF5 files to be compared.
-h Print all differences.
-r Print only the names of objects that differ; do not print the differences. These objects may be HDF5 datasets, groups, or named
datatypes.
-n count
Print difference up to count differences, then stop. count must be a positive integer.
-d delta
Print only differences that are greater than the limit delta. delta must be a positive number. The comparison criterion is whether
the absolute value of the difference of two corresponding values is greater than delta (e.g., |a-b| > delta, where a is a value in
file1 and b is a value in file2).
-p relative
Print only differences that are greater than a relative error. relative must be a positive number. The comparison criterion is
whether the absolute value of the difference 1 and the ratio of two corresponding values is greater than relative (e.g., |1-(b/a)| >
relative where a is a value in file1 and b is a value in file2).
object1 object2
Specific object(s) within the files to be compared.
EXAMPLES
The following h5diff call compares the object /a/b in file1 with the object /a/c in file2:
h5diff file1 file2 /a/b /a/c
This h5diff call compares the object /a/b in file1 with the same object in file2:
h5diff file1 file2 /a/b
And this h5diff call compares all objects in both files:
h5diff file1 file2
SEE ALSO h5dump(1), h5ls(1), h5repart(1), h5import(1), gif2h5(1), h52gif(1), h5perf(1)h5diff(1)