Dear All
I have a file like this
112534554
446538656
444695656
225696966
226569744
228787874
113536566
443533535
222564552
115464656
225445345
225533234
I want to cut the file into different parts where the first two columns are '11' . The first two columns will be either... (3 Replies)
All,
i need a script which can zip the all files which are in directories and its subdirectories
for example:
dir1 contains file1,file2,dir1a,dir1b
now dir1a also contains fil11,fil12 ,dirab
so script should look for files in dir or sub dir till files not found and... (2 Replies)
Hello UNIX experts,
I have 124 text files in a directory. I want to extract the 45678th line of all the files sequentialy by file names. The extracted lines should be printed in the output file on seperate lines.
e.g. The input Files are one.txt, two.txt, three.txt, four.txt
The cat of four... (1 Reply)
Hi everyone, this is my first post here, I hope someone can help me.
I have a file which I need to delete characters '_F3' from the end of the text in the first column. The problem is that the characters may also occur elsewhere in the file (i.e. second columns onwards). I tried sed (thinking I... (6 Replies)
I have n files and I am using cat to combine them in to one.
Before that simply add the name of the output file to 4th column and then print the output. Is it possible ?
input1
chr start end name 0 + key
input2
chr start end name 0 + key
inputn... (1 Reply)
I have an awk script to find the maximum value of the 2nd column of a 2 column datafile, but I need to find the top 5 maximum values of the 2nd column.
Here is the script that works for the maximum value.
awk 'BEGIN { subjectmax=$1 ; max=0} $2 >= max {subjectmax=$1 ; max=$2} END {print... (3 Replies)
Is there an awk script that can easily perform the following operation?
I have a data file that is in the format of
1944-12,5.6
1945-01,9.8
1945-02,6.7
1945-03,9.3
1945-04,5.9
1945-05,0.7
1945-06,0.0
1945-07,0.0
1945-08,0.0
1945-09,0.0
1945-10,0.2
1945-11,10.5
1945-12,22.3... (3 Replies)
Hi
I have 5 columns like this
a b c d e
f g h i j
k l m n o
From 2nd column till the 5th column of every record, I would like to transpose them as rows, so my output file contains only one row
a
b
c
d
e
f
g
h
i
j (9 Replies)
Hi,
I have a requirement to search for a pattern in each line in a file and remove the in between words till the 3rd occurrence of double quote (").
Ex: CREATE TABLE "SCHEMANAME"."AMS_LTV_STATUS"
(Note: "SCHEMANAME" may changes for different schemas. Its not a fixed value)
I need to... (2 Replies)
Hi,
My input files is like this
axis1 0 1 10
axis2 0 1 5
axis1 1 2 -4
axis2 2 3 -3
axis1 3 4 5
axis2 3 4 -1
axis1 4 5 -6
axis2 4 5 1
Now, these are my following tasks
1. Print a first column for every two rows that has the same value followed by a string.
2. Match on the... (3 Replies)
Discussion started by: jacobs.smith
3 Replies
LEARN ABOUT DEBIAN
bio::chado::schema::test
Bio::Chado::Schema::Test(3pm) User Contributed Perl Documentation Bio::Chado::Schema::Test(3pm)NAME
Bio::Chado::Schema::Test - Library to be used by Bio::Chado::Schema test scripts.
SYNOPSIS
use lib qw(t/lib);
use Bio::Chado::Schema::Test;
use Test::More;
my $schema = Bio::Chado::Schema::Test->init_schema();
DESCRIPTION
This module provides the basic utilities to write tests against Bio::Chado::Schema.
METHODS
init_schema
my $schema = Bio::Chado::Schema::Test->init_schema(
deploy => 1,
populate => 1,
storage_type => '::DBI::Replicated',
storage_type_args => {
balancer_type=>'DBIx::Class::Storage::DBI::Replicated::Balancer::Random'
},
);
This method removes the test SQLite database in t/var/BCS.db and then creates a new, empty database.
This method will call deploy_schema() by default, unless the deploy flag is set to 0.
This method will call populate_schema() if the populate argument is set to a true value.
has_custom_dsn
Returns true if the BCS_TEST_DSN environment variable is set.
deploy_schema
Bio::Chado::Schema::Test->deploy_schema( $schema );
This method does one of two things to the schema. It can either call the experimental $schema->deploy() if the BCSTEST_SQLT_DEPLOY
environment variable is set, otherwise the default is to read in the t/lib/sqlite.sql file and execute the SQL within. Either way you end
up with a fresh set of tables for testing.
populate_schema
Bio::Chado::Schema::Test->populate_schema( $schema );
After you deploy your schema you can use this method to populate the tables with test data.
perl v5.14.2 2011-11-08 Bio::Chado::Schema::Test(3pm)