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Full Discussion: Help with a bash loop script
Top Forums UNIX for Beginners Questions & Answers Help with a bash loop script Post 303037354 by balajesuri on Tuesday 30th of July 2019 10:21:10 AM
Old 07-30-2019
1. Could you please show what you have tried?

2. Please understand that forum members may not have working knowledge of biology. So when you say, "Print out the number of occurrences for each motif that is found in the bacterial genome", this makes no sense to me (and may not to a lot others too)
3. A good post requesting assistance should in my humble opinion have the following information:
  • Clearly state the problem without any ambiguity. Break down your problem into the smallest part where you need help. Posting a question 100 lines long will yield no result. People will yawn and go back to doing their day job.
  • Show your attempt at solving the problem. This will help members focus on the exact place where you need help; and not have to dig about and assume where you might be facing the issue.
  • One line about your OS, your shell, preferred scripting language..
 

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LEARN ABOUT DEBIAN

oarstat

oarstat(1)							   OAR commands 							oarstat(1)

NAME

       oarstat - show information about jobs

SYNOPSIS

       oarstat [-X|-Y|-J|-D|-f] [-j jobid|--array arrayid] [--sql SQL_properties] [-u user] [--array]

       oarstat [-e|-p] [-j jobid | --array arrayid]

       oarstat -s [-X|-Y|-J|-D] -j jobid

       oarstat [-X|-Y|-J|-D] --gantt "YYYY-MM-DD hh:mm:ss, YYYY-MM-DD hh:mm:ss"

       oarstat --accounting "YYYY-MM-DD, YYYY-MM-DD"

DESCRIPTION

       This command is used to show information of jobs in OAR batch scheduler.

OPTIONS

       -f, --full
	   Very detailed display.

       -j, --job job_id
	   Print information from a specific job.

       -e, --events
	   Print job events only.

       -p, --properties
	   Print job properties in the same format as in the $OAR_RESOURCE_PROPERTIES_FILE file on the nodes.

       -s, --state
	   Print only the state of a specified job. It makes a minimal query to the database. It is optimized to allow scripting for example. Must
	   be used with -j.

       -u, --user [login]
	   Print information for the current user or the one given.  If used with --accounting, print a more detailed accounting report for the
	   user.

       --array [array_id]
	   Toggle the visualization of array information on.  If an array_id is provided, print information relative to the subjobs of the given
	   array job.

       --sql
	   Restricts display with the SQL where clause on the table jobs (ex: "project = 'p1'")

       -D, --DUMPER
	   Print result in DUMPER format.

       -X, --XML
	   Print result in XML format.

       -Y, --YAML
	   Print result in YAML format.

       -J, --JSON
	   Print result in JSON format.

       -g, --gantt "date_start,date_stop"
	   Print history of jobs and state of resources between two dates like "2006-03-30 13:49:27, 2006-04-30 13:49:27"

       --accounting "date_start,date_stop"
	   Shows accounting information between two dates like "2006-03-30, 2006-04-30".
	    If --user is also used, more details are shown for this particular user.
	    Warning: the accounting table must be up to date. The update must be done at superuser level with the oaraccounting command.

       -V, --version
	   Print OAR version number.

       -h, --help
	   Print help message.

SEE ALSO

       oarprint(1), oarsub(1), oardel(1), oarnodes(1), oarhold(1), oarresume(1)

COPYRIGHTS

	Copyright 2008 Laboratoire d'Informatique de Grenoble (http://www.liglab.fr). This software is licensed under the GNU Library General Public License. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

oarstat 							    2012-05-23								oarstat(1)
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