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Full Discussion: Help with a bash loop script
Top Forums UNIX for Beginners Questions & Answers Help with a bash loop script Post 303037354 by balajesuri on Tuesday 30th of July 2019 10:21:10 AM
Old 07-30-2019
1. Could you please show what you have tried?

2. Please understand that forum members may not have working knowledge of biology. So when you say, "Print out the number of occurrences for each motif that is found in the bacterial genome", this makes no sense to me (and may not to a lot others too)
3. A good post requesting assistance should in my humble opinion have the following information:
  • Clearly state the problem without any ambiguity. Break down your problem into the smallest part where you need help. Posting a question 100 lines long will yield no result. People will yawn and go back to doing their day job.
  • Show your attempt at solving the problem. This will help members focus on the exact place where you need help; and not have to dig about and assume where you might be facing the issue.
  • One line about your OS, your shell, preferred scripting language..
 

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LEARN ABOUT DEBIAN

xsil2graphics

XSIL2GRAPHICS(1)					User Contributed Perl Documentation					  XSIL2GRAPHICS(1)

NAME

       xsil2graphics - generate scripts to load xsil output data files

SYNOPSIS

       xsil2graphics [options] <xsil_file>

DESCRIPTION

       Utility program bundled with xmds, used to generate scripts that load simulation output data into either matlab (http://www.mathworks.com)
       or scilab (http://www.scilab.org), which are then used to manipulate the results further if necessary and then to present the results
       graphically.

       Matlab

       To generate a matlab m-file, from the xsil file data_file.xsil use the command:

       bash$ xsil2graphics data_file.xsil

       or

       bash$ xsil2graphics --matlab data_file.xsil

       Then at the matlab command prompt:

       >> data_file

       Scilab

       To generate a scilab script file, from the xsil file data_file.xsil use the command:

       bash$ xsil2graphics --scilab data_file.xsil

       Then at the scilab command prompt:

       --> exec('data_file.sci')

OPTIONS

       -m, --matlab generate matlab m-file script to load data from the xsil data file (the default option)

       -s, -scilab generate scilab script file to load data from the xsil data file

       -o, --outfile <out_file> specify an alternative output script filename to the default which is the input xsil filename with the .xsil
       extension changed to either .m for the matlab m-file or .sci for the scilab script file

EXAMPLES

       bash$ xsil2graphics nlse.xsil

       Generates the output nlse.m to load the data into matlab

       bash$ xsil2graphics -m nlse.xsil

       Also generates the output nlse.m but explicitly sets matlab to be the output format

       bash$ xsil2graphics --scilab nlse.xsil

       Generates the output nlse.sci to load the data into scilab

       bash$ xsil2graphics --outfile nlse_new.m nlse.xsil

       Generates the output nlse_new.m to load the data into matlab

AUTHORS

       Originally written by Greg Collecutt

       Maintained by Paul Cochrane with code contributed by Joe Hope

BUGS

       No known bugs.

SEE ALSO

       xmds(1), loadxsil(1)

       http://www.xmds.org

COPYRIGHT

       Copyright (C) 2000-2004

       Code contributed by Greg Collecutt, Joseph Hope and Paul Cochrane

       This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by
       the Free Software Foundation; either version 2 of the License, or (at your option) any later version.

       This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MER-
       CHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License for more details.

       You should have received a copy of the GNU General Public License along with this program; if not, write to the Free Software Foundation,
       Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.

perl v5.8.2							    2004-06-21							  XSIL2GRAPHICS(1)
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