07-30-2019
1. Could you please show what you have tried?
2. Please understand that forum members may not have working knowledge of biology. So when you say, "Print out the number of occurrences for each motif that is found in the bacterial genome", this makes no sense to me (and may not to a lot others too)
3. A good post requesting assistance should in my humble opinion have the following information:
- Clearly state the problem without any ambiguity. Break down your problem into the smallest part where you need help. Posting a question 100 lines long will yield no result. People will yawn and go back to doing their day job.
- Show your attempt at solving the problem. This will help members focus on the exact place where you need help; and not have to dig about and assume where you might be facing the issue.
- One line about your OS, your shell, preferred scripting language..
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LEARN ABOUT DEBIAN
xsil2graphics
XSIL2GRAPHICS(1) User Contributed Perl Documentation XSIL2GRAPHICS(1)
NAME
xsil2graphics - generate scripts to load xsil output data files
SYNOPSIS
xsil2graphics [options] <xsil_file>
DESCRIPTION
Utility program bundled with xmds, used to generate scripts that load simulation output data into either matlab (http://www.mathworks.com)
or scilab (http://www.scilab.org), which are then used to manipulate the results further if necessary and then to present the results
graphically.
Matlab
To generate a matlab m-file, from the xsil file data_file.xsil use the command:
bash$ xsil2graphics data_file.xsil
or
bash$ xsil2graphics --matlab data_file.xsil
Then at the matlab command prompt:
>> data_file
Scilab
To generate a scilab script file, from the xsil file data_file.xsil use the command:
bash$ xsil2graphics --scilab data_file.xsil
Then at the scilab command prompt:
--> exec('data_file.sci')
OPTIONS
-m, --matlab generate matlab m-file script to load data from the xsil data file (the default option)
-s, -scilab generate scilab script file to load data from the xsil data file
-o, --outfile <out_file> specify an alternative output script filename to the default which is the input xsil filename with the .xsil
extension changed to either .m for the matlab m-file or .sci for the scilab script file
EXAMPLES
bash$ xsil2graphics nlse.xsil
Generates the output nlse.m to load the data into matlab
bash$ xsil2graphics -m nlse.xsil
Also generates the output nlse.m but explicitly sets matlab to be the output format
bash$ xsil2graphics --scilab nlse.xsil
Generates the output nlse.sci to load the data into scilab
bash$ xsil2graphics --outfile nlse_new.m nlse.xsil
Generates the output nlse_new.m to load the data into matlab
AUTHORS
Originally written by Greg Collecutt
Maintained by Paul Cochrane with code contributed by Joe Hope
BUGS
No known bugs.
SEE ALSO
xmds(1), loadxsil(1)
http://www.xmds.org
COPYRIGHT
Copyright (C) 2000-2004
Code contributed by Greg Collecutt, Joseph Hope and Paul Cochrane
This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or (at your option) any later version.
This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MER-
CHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.
You should have received a copy of the GNU General Public License along with this program; if not, write to the Free Software Foundation,
Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
perl v5.8.2 2004-06-21 XSIL2GRAPHICS(1)